BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0105.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO4077 [K] COG2345 Predicted transcriptional regulator Ype Yers... 171 1e-42 VC2666 Non COG 166 4e-41 BH3429 [K] COG2345 Predicted transcriptional regulator Bha Bacil... 96 9e-20 sll0088 [K] COG2345 Predicted transcriptional regulator Syn Syne... 94 3e-19 DR0999 [K] COG2345 Predicted transcriptional regulator Dra Deino... 92 7e-19 >YPO4077 [K] COG2345 Predicted transcriptional regulator Ype Yersinia pestis Length = 214 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 7/205 (3%) Query: 13 STAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPR 72 S ERLLL LKT GP E L T EAARQQ KLA +GL+ T GRP Sbjct: 12 SVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKLAKKGLVVAEA--QTRGVGRPI 69 Query: 73 QDWELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGIT 132 Q W+LT +G+ FPD H +L VQL+ IR G+ L LID REQ+ R Y G++ Sbjct: 70 QLWQLTESGNTHFPDAHGELAVQLLRLIRTQLGDNALELLIDSREQETRDQYCQAMVGVS 129 Query: 133 APGKRLQRLAELRTAEGYMA--RVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGE 190 +R++RL +RT EGYMA +VE G LLIE+HCPI AAA++CQ FCR+EL +F + Sbjct: 130 NVAERVERLVAIRTGEGYMAQSQVEADG-TILLIENHCPIWAAAASCQRFCRTELAVFQQ 188 Query: 191 VLGEEFAITREEHLPAGGRRCVYRI 215 LG + R EH+ +G RRC YRI Sbjct: 189 ALG--VPVERVEHILSGARRCTYRI 211 >VC2666 Non COG Length = 205 Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/205 (42%), Positives = 123/205 (60%), Gaps = 8/205 (3%) Query: 14 TAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPRQ 73 T +R+L +K G + +LA +L IT ARQ LQ L EG++ V+ V+ GRP + Sbjct: 3 TVDRILHTIKREGTVTAKQLAEDLGITTMGARQHLQSLEEEGVLAFHDVK--VKVGRPTR 60 Query: 74 DWELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADY---LLQCDG 130 W LT GH +F D H +LT+Q+I ++ +FG+ GL K+ +RE A Y L++C Sbjct: 61 HWSLTAKGHNQFADRHGELTIQVIDAVEHIFGKEGLAKVAAEREAQTFAAYHNALVECHS 120 Query: 131 ITAPGKRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGE 190 + ++L+ L LR EGYMA +E ++LIE+HCPIC AA+ C C+SEL +F Sbjct: 121 LQ---EKLEALVTLREQEGYMAELESTADGFILIENHCPICKAATRCPSLCQSELNVFRR 177 Query: 191 VLGEEFAITREEHLPAGGRRCVYRI 215 +LGEE I R EH+ AG RRC Y I Sbjct: 178 LLGEECHIERREHIVAGERRCTYFI 202 >BH3429 [K] COG2345 Predicted transcriptional regulator Bha Bacillus halodurans Length = 215 Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 4/187 (2%) Query: 13 STAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPR 72 ST + +LL LK G S E+A EL+IT A R+ +Q L +G + + V+ + GRP Sbjct: 8 STRDLILLGLKRHGERSVGEMAKELEITEMAVRRHIQALEKDGFVQTKLVRQAM--GRPT 65 Query: 73 QDWELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGIT 132 + LT G RFP + LT+ + I +L G +H L ++R++ + A+Y Q G + Sbjct: 66 TKYLLTEKGEERFPRNYLPLTLGFLKDIEELSGIDMIHVLFEKRKERLLAEYANQMKGCS 125 Query: 133 APGKRLQRLAELRTAEGYMARVEKQGRD-WLLIEDHCPICAAASTCQGFCRSELQLFGEV 191 +R++ LA+++ GYM +K D + IE +CPI A C E +LF E+ Sbjct: 126 F-SERVEVLAQIQNDNGYMVEWKKIDDDTYQFIEYNCPISQVAKAYPVACACEKKLFKEL 184 Query: 192 LGEEFAI 198 L E + Sbjct: 185 LQTEAVV 191 >sll0088 [K] COG2345 Predicted transcriptional regulator Syn Synechocystis Length = 240 Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 8/208 (3%) Query: 13 STAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPR 72 ST E +L L G S +A EL I+P+A R+ L+ L +GLI +Q + ++ GRP+ Sbjct: 32 STKEDILCYLLKEGQGSAIAMAEELGISPQAMRKHLKDLENDGLIEHQQERQSM--GRPQ 89 Query: 73 QDWELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGIT 132 ++L+ G +FP + + + I S+ + GE L ++ ++ Q +A+ Q G Sbjct: 90 FLYQLSKQGREQFPQRYGEFALSFIDSLVETVGEEQLGAVLKKQWQR-KAEAYRQQIGQG 148 Query: 133 APGKRLQRLAELRTAEGYMARVE----KQGRDWLLIEDHCPICAAASTCQGFCRSELQLF 188 KR+ +L ELR EGYMA + +Q ++L E HC I A + C EL++F Sbjct: 149 PLSKRVHKLVELRRQEGYMAEIHPLSVEQAEKFILSEHHCAIADVAESYPTVCGHELEMF 208 Query: 189 GEVLGEEFAITREEHLPAGGRRCVYRIR 216 +L + AI R L G C Y I+ Sbjct: 209 AAIL-PDCAIERTHWLNDGEHTCGYLIQ 235 >DR0999 [K] COG2345 Predicted transcriptional regulator Dra Deinococcus radiodurans Length = 225 Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 4/203 (1%) Query: 14 TAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPRQ 73 T RLL LK GP + +LA L++T AAR+ L L A+GL+ QV+ GRP+ Sbjct: 25 TKTRLLELLKRHGPQTAQDLAARLRVTSPAARRHLTDLQAQGLV-QVQVEKPGGRGRPQH 83 Query: 74 DWELT-GAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGIT 132 + LT A R FP T+A L + ++ S+ L+G + +++ R + A Sbjct: 84 VFGLTEHAEERTFPKTYASLCLDVLESVSDLYGRDAVDEVLRARSDRLEALLRDLLPPEM 143 Query: 133 APGKRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGEVL 192 ++L+RL T G+ +E++G W L++ +CP A + C +E+ ++ ++L Sbjct: 144 PLEEKLRRLIGPLTELGFAPHLEQEGGQWSLVQCNCPNLQVARQFKVMCSAEMAMYTKLL 203 Query: 193 GEEFAITREEHLPAGGRRCVYRI 215 G +TREEH+ G C YR+ Sbjct: 204 G--VPVTREEHMACGQPSCRYRL 224