BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0102.p (316 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 144 4e-34 AGc4269 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 139 7e-33 Z3395 [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 130 4e-30 ECs3032 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 130 4e-30 STM2180 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 114 2e-25 >PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 315 Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 1/274 (0%) Query: 33 SLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLIPNQFGHCVIRYARLMATDLG 92 SL +A+ + MTQ AA+K L E E +L +LFER G+ FG +I Y+R++ +L Sbjct: 30 SLRRAADEIGMTQPAATKMLHEAEDLLGVELFERLPRGMRATPFGETLIYYSRMIFAELS 89 Query: 93 SLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAVDALQRRHPELSIDIVEETSVQLLSRL 152 + EE+ + SG GR+ +GA+ L+ + L++ HP LS+ I +TS L+ L Sbjct: 90 GMREELVALESGNLGRVTVGAIPALASSLLTRTIATLKQSHPRLSMSIQVDTSDVLVQAL 149 Query: 153 DEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHPRPRGRQMSLAALAGYRWVTY 212 + LD+++ R + L EE L VVV ++P + R++ L WV Sbjct: 150 QQDQLDVVLGRIPSGARTDDLVFDSLGEEELCVVVGAQNPLSQARKLDWGELQELTWVLQ 209 Query: 213 PSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVALLQQGTDMVSILPTAVAEMFVKRG 272 P+ ++ + A + +P + + T S ++LLQQ TDM+ I P +V E + + Sbjct: 210 QHPSPMRGIVNQAFHNARIDLPSSIVETTSIMTLLSLLQQ-TDMIGITPRSVIEDYPGKH 268 Query: 273 MLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFV 306 +L ILP++L G++TR+ S A Q F+ Sbjct: 269 LLAILPIQLEPRLPPYGLITRRNRVHSSAMQTFM 302 >AGc4269 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 341 Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 148/283 (52%), Gaps = 5/283 (1%) Query: 17 LRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLIPNQF 76 L+M L++L+ +++H + A++A+ MTQ AAS+ L+E+E+++ + L +R G++ +F Sbjct: 36 LKMSHLRMLVMIEEHGQVSAAAAAMNMTQPAASRMLSEMEAIVKSPLCQRASRGVVLTKF 95 Query: 77 GHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAVDALQRRHPEL 136 G + R AR + +L E+ Q++SG GG + IGAV LVVPA+ +P + Sbjct: 96 GEALARRARTILLELREASRELNQMKSGSGGSVYIGAVTAPAISLVVPAIRRAMDTYPGI 155 Query: 137 SIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHPRPRG 196 I++ E+S L L D ++ R +PG + + E +VV HP RG Sbjct: 156 EINVQVESSNVLARELLAARHDFIIGRIPDDFDPGLFSIHEIGIERACLVVREGHPLMRG 215 Query: 197 RQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVALLQQGTDM 256 ++L L+GY WV P L +E GV+MP N I+T S +T+AL+ T+ Sbjct: 216 EPVTLQDLSGYDWVFQPPGALLRRTMEDVFLTHGVAMPRNVINTPSVVLTLALVCN-TNA 274 Query: 257 VSILPTAVAEMFVKR----GMLRILPVKLRSMSQTIGIVTRKG 295 ++ + +AE + G RILP + + I+T KG Sbjct: 275 IAPIAQDMAEFVAGQQADIGRTRILPTDFELVVKPYSIITTKG 317 >Z3395 [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 318 Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 3/298 (1%) Query: 16 RLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLIPNQ 75 +L++ L++L+AL + +L + + +TQ A SK L++LE + LFER GL P + Sbjct: 23 KLKLHHLEMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSKGLRPTE 82 Query: 76 FGHCVIRYARLMATDLGSLCEEMAQIR-SGRGGRLAIGAVMGALPELVVPAVDALQRRHP 134 G ++++A+ + D+ E+A+ + G G L IG A + V A+ L + P Sbjct: 83 GGKLLLQHAQRLINDMERSQHELARFKQGGLVGSLKIGCSPVA-TDCVSQAILHLLTKMP 141 Query: 135 ELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHPRP 194 L ++I E+ LL L G +D++V R +YQ L EP+ V EHP Sbjct: 142 TLHLNIEEKVMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYQVLYTEPVCFVARPEHPLA 201 Query: 195 RGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVALLQQGT 254 + +S LA +RW+ +P+ P+ ++ + GV +P N I +AS V+ LL Q + Sbjct: 202 KYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASMNVSTNLL-QSS 260 Query: 255 DMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFVRLLQEG 312 DM+SIL +A+ + +G L IL + ++G+ R S A F+ LQ+ Sbjct: 261 DMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRNNETPSYALSQFLHFLQQN 318 >ECs3032 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 318 Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 3/298 (1%) Query: 16 RLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLIPNQ 75 +L++ L++L+AL + +L + + +TQ A SK L++LE + LFER GL P + Sbjct: 23 KLKLHHLEMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSKGLRPTE 82 Query: 76 FGHCVIRYARLMATDLGSLCEEMAQIR-SGRGGRLAIGAVMGALPELVVPAVDALQRRHP 134 G ++++A+ + D+ E+A+ + G G L IG A + V A+ L + P Sbjct: 83 GGKLLLQHAQRLINDMERSQHELARFKQGGLVGSLKIGCSPVA-TDCVSQAILHLLTKMP 141 Query: 135 ELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHPRP 194 L ++I E+ LL L G +D++V R +YQ L EP+ V EHP Sbjct: 142 TLHLNIEEKVMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYQVLYTEPVCFVARPEHPLA 201 Query: 195 RGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVALLQQGT 254 + +S LA +RW+ +P+ P+ ++ + GV +P N I +AS V+ LL Q + Sbjct: 202 KYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASMNVSTNLL-QSS 260 Query: 255 DMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFVRLLQEG 312 DM+SIL +A+ + +G L IL + ++G+ R S A F+ LQ+ Sbjct: 261 DMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRNNETPSYALSQFLHFLQQN 318 >STM2180 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 302 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 3/297 (1%) Query: 16 RLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLIPNQ 75 +L++ LQ L+AL + +L + + ++Q A SK L++LE + LFER GL P++ Sbjct: 7 KLKLHHLQTLVALGEQGNLTHVARMMNISQPALSKWLSQLEDEIGITLFERHSKGLRPSE 66 Query: 76 FGHCVIRYARLMATDLGSLCEEMAQIRS-GRGGRLAIGAVMGALPELVVPAVDALQRRHP 134 G ++++A+ + DL E+A+ + G G L IG A + V A+ +L P Sbjct: 67 GGKLLLQHAQRLINDLERSQYEIARFKQGGLVGSLKIGCSPVA-TDCVSQAILSLLNEMP 125 Query: 135 ELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHPRP 194 L ++I E+ LL L G +D++V R +YQ L EP+ V HP Sbjct: 126 TLHLNIEEKVMTPLLHDLLAGQVDVVVGRVGGRALQLPLNYQVLYTEPVCFVARPHHPLA 185 Query: 195 RGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVALLQQGT 254 Q++ + LA +RW+ +P+ P+ ++ + GV +P N I +AS V+ LL Q + Sbjct: 186 ARAQIAWSDLAHWRWIVWPTGTPIRISIDNALVDNGVMLPENTIESASMNVSTNLL-QSS 244 Query: 255 DMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFVRLLQE 311 DM+SIL +A+ + +G L IL + ++G+ RK S+A F+ L + Sbjct: 245 DMISILSLRLAQRYASQGQLAILNLPKIEQKGSVGMFWRKNETPSLALSRFLYFLAQ 301