BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0096.p (896 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sll1353_2 [T] COG0642 Signal transduction histidine kinase Syn S... 149 4e-35 all1389_1 [T] COG0642 Signal transduction histidine kinase Nos N... 139 2e-32 all4496 [T] COG0642 Signal transduction histidine kinase Nos Nos... 135 3e-31 alr1121_3 [T] COG0642 Signal transduction histidine kinase Nos N... 135 6e-31 VC2369_1 [T] COG0642 Signal transduction histidine kinase Vch Vi... 134 9e-31 >sll1353_2 [T] COG0642 Signal transduction histidine kinase Syn Synechocystis Length = 351 Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 141/246 (57%), Gaps = 8/246 (3%) Query: 423 LREALAAADQANRAKTGFLTRISHDLRTPLTSILGFADMLQTGG---GERARHGRIIVRS 479 LREA +A+ ANR K+ FL ISH++RTP+ +ILGF D+L + ++ I S Sbjct: 96 LREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTKKYLNAIGSS 155 Query: 480 ARHMLAMVNDLIDYARGDRPDLP-HAAPVYAHALLQEIGQEAALLAERQHNSFHLQVDPT 538 ++ +LA+++D++D ++ + L H PV +++EI Q AE + +Q+D T Sbjct: 156 SKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDET 215 Query: 539 LPPVLAIDARRLRRILGNLLDNAAKYTRDGRIVLQILWHPASAKSEMGVMEM--QVRDTG 596 L + DA RLR+IL NL+ NA K+T +G++ + I +S+ + + +V DTG Sbjct: 216 LNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTG 275 Query: 597 SGIPAHFQTRVFEPFERA--NADRSQPGIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMT 654 GI Q ++F+ F ++ + R G G+GL+I R+ +GG++ LSSR GEG+T Sbjct: 276 IGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTFI 335 Query: 655 LRLPAA 660 L PA Sbjct: 336 LHFPAV 341 >all1389_1 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 595 Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 137/249 (55%), Gaps = 7/249 (2%) Query: 423 LREALAAADQANRAKTGFLTRISHDLRTPLTSILGFADMLQTGGG---ERARHGRIIVRS 479 L+++ AAD AN AK+ FL +SH+LRTPL ILG A +LQ + H II + Sbjct: 327 LKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSTLPEQEQHHINIIEQC 386 Query: 480 ARHMLAMVNDLIDYARGDRPDLP-HAAPVYAHALLQEIGQEAALLAERQHNSFHLQVDPT 538 H+L ++ND++D A+ + L H V+ + +Q I + + A ++ F + Sbjct: 387 GSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFVYEPASN 446 Query: 539 LPPVLAIDARRLRRILGNLLDNAAKYTRDGRIVLQI--LWHPASAKSEMGVMEMQVRDTG 596 LP L IDA+RLR++L NLL NA K+T G++ L++ + ++ K + + DTG Sbjct: 447 LPIWLHIDAKRLRQVLLNLLGNAIKFTDHGQVKLKVETIEESSTQKPVKHRIRYCIEDTG 506 Query: 597 SGIPAHFQTRVFEPFERANADRSQP-GIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMTL 655 GI +++F PFE+ + Q G G+GL+I RQ +Q MG + ++S+ G G+T Sbjct: 507 IGITDAELSKIFLPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVTSQVGHGSTFWF 566 Query: 656 RLPAAISSE 664 L ++E Sbjct: 567 ELEMVATNE 575 >all4496 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 575 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 141/259 (54%), Gaps = 12/259 (4%) Query: 411 KLEQAVVARTRDLREALAAADQANRAKTGFLTRISHDLRTPLTSILGFADMLQTG----- 465 +L + V RT++L +A A+ A++AK+ FL +SH+LRTPL +++G + +L+ Sbjct: 313 RLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLN 372 Query: 466 -GGERARHGRIIVRSARHMLAMVNDLIDYARGDRPDLPHAAPVY-AHALLQEIGQEAALL 523 GE I + RH+L ++ND++D ++ + + ++ L+ + Sbjct: 373 LSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVVTVKPT 432 Query: 524 AERQHNSFHLQVDPTLPPVLAIDARRLRRILGNLLDNAAKYTRDGRIVLQILWHPASAKS 583 E+ +N + D L + A D R+R++L NLL NAAK+T +GRI L + Sbjct: 433 IEKNNNLLEIYCDEHLGTMYA-DQTRMRQVLLNLLSNAAKFTTNGRIKLTVRREKEDFLP 491 Query: 584 EM--GVMEMQVRDTGSGIPAHFQTRVFEPFERANADRSQP--GIGMGLSIVRQWMQQMGG 639 EM G + V DTG G+ Q ++F+PF + + ++ G G+GL+I R + Q MGG Sbjct: 492 EMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGG 551 Query: 640 QVMLSSRPGEGTTMTLRLP 658 ++++ S+ G G+T T+ LP Sbjct: 552 EIIVKSQLGLGSTFTVYLP 570 >alr1121_3 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 292 Score = 135 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 16/251 (6%) Query: 437 KTGFLTRISHDLRTPLTSILGFADMLQTG-----GGERARHGRIIVRSARHMLAMVNDLI 491 K+ FL +SH+LRTPL S+L A +L ++ + + I + +LA++ND++ Sbjct: 2 KSEFLANMSHELRTPLNSLLILAKLLTDNVDSNLTAKQVEYSQTIYSAGNELLALINDIL 61 Query: 492 DYARGDRPDLP-HAAPVYAHALLQEIGQEAALLAERQHNSFHLQVDPTLPPVLAIDARRL 550 D A+ + + HA P+ L ++I + +A+ + +F +++ P LP + D +RL Sbjct: 62 DLAKIESGTMSIHATPIPLSELAEQIERGFGQIAQNKGLTFAVELAPELPTTVNTDIKRL 121 Query: 551 RRILGNLLDNAAKYTRDGRIVLQIL-----WHPASA--KSEMGVMEMQVRDTGSGIPAHF 603 +++L NLL NA K+T G + L+I W+P V+ V DTG GI A Sbjct: 122 QQVLKNLLSNAFKFTERGEVRLRIEVAKPGWNPNQQPLNPAQNVIAFAVSDTGIGIAADK 181 Query: 604 QTRVFEPFERANADRSQP--GIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMTLRLPAAI 661 Q +FE F++A+ S+ G G+GLSI R+ +GG++ L+S PG+G+T T LP Sbjct: 182 QKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIKLTSHPGQGSTFTFYLP-QF 240 Query: 662 SSERDIARHDA 672 S E + DA Sbjct: 241 SPESTLNHADA 251 >VC2369_1 [T] COG0642 Signal transduction histidine kinase Vch Vibrio cholerae Length = 526 Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 138/236 (58%), Gaps = 11/236 (4%) Query: 431 DQANRAKTGFLTRISHDLRTPLTSILGFADMLQTG--GGERARHGRIIVRSARHMLAMVN 488 ++A+R KT F++ ISH+LRTPL I+G + ML GE+ +H + I SA + + N Sbjct: 277 EKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFN 336 Query: 489 DLIDYARGDRPDLP-HAAPVYAHALLQEIGQEAALLAERQHNSFHLQVDPTLPPVLAIDA 547 D+ID + DR L A + + EI AAL+AE++ F L+ LP ++ +D+ Sbjct: 337 DIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDS 396 Query: 548 RRLRRILGNLLDNAAKYTRDGRIVLQILWHPASAKSEMGVMEMQVRDTGSGIPAHFQTRV 607 RLR++L NLL NA K+T++G +V+ + A ++ + ++V DTG GIP Q ++ Sbjct: 397 TRLRQVLWNLLSNAMKFTKEGGVVMTV---SAECDAQHAEITIEVEDTGIGIPEAEQEKI 453 Query: 608 FEPFERANADRSQ---PGIGMGLSIVRQWMQQMGGQVMLSSRPGEGT--TMTLRLP 658 F + + + + G G+GL++ RQ ++ MGG + ++S G G+ T+T+R+P Sbjct: 454 FAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVP 509