BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0093.p (349 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 349 5e-96 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 342 5e-94 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 341 1e-93 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 336 5e-92 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 330 3e-90 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 349 bits (896), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 186/288 (64%), Positives = 231/288 (80%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 VA G+LT ++V ++DE G LL+ALK M +L IVS VR GTD I ASS++ASGN+DL Sbjct: 228 VAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDL 287 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 SSRTEQQASSLEETA++ME+LTSTV+QN+ NA+EA+R+A AS +A+ GG V ++TM Sbjct: 288 SSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTM 347 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 IN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA Sbjct: 348 STINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSA 407 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAAKEIKALI DSV V +G+ V EAG +R++V +Q VT +++EISA+ EQ GIE Sbjct: 408 AAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIE 467 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDA 288 Q+++A+ MD+ TQ+NA+LVEE+A A+Q+LQ+QA +LA VS F+L A Sbjct: 468 QINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLHA 515 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 342 bits (878), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 246/327 (75%), Gaps = 18/327 (5%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 +AGGDL+ I R D+ LL A+ M +LV + +R ++ I TA+ +IASGNLDL Sbjct: 236 IAGGDLSVEIATRP-DDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDL 294 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 SSRTEQQASSLEETAS+MEEL STVQQN+ NA +AN++A +ASD+A GG VVSRVVETM Sbjct: 295 SSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETM 354 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 INASSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA Sbjct: 355 GSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSA 414 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAAKEIKALI DSV V++GS LV EAG TMREIV SV+RVT ++ EI+AA +EQRSGIE Sbjct: 415 AAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIE 474 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDAQAAQEMAIDVAA 300 +VS AV +D TQQNAALVE+AAAA+QSLQEQA L Q V+ FRLD Sbjct: 475 EVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD------------- 521 Query: 301 AAVTPAPAAIKKAPATIKPRIAPREPR 327 P +A++ A +P IAP P+ Sbjct: 522 ----PTMSAVRSVVAKAEPTIAPPVPK 544 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 341 bits (875), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 185/286 (64%), Positives = 230/286 (80%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 +A GDLT I+V R+E G L ++LK M + LVTIV VR G D I + +S+IA GN DL Sbjct: 232 IANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDL 291 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 S+RTEQQA+SLEETA+SME+LT+TV+QN+ NAR+A+++A +AS+ A GG VV+ VV+TM Sbjct: 292 SARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTM 351 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 EI SS+KI DI SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA Sbjct: 352 HEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSA 411 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAKEIK LI DSV +V+ GSVLV AG+TM +IV +V RVT ++ EI++A +EQ GI+ Sbjct: 412 QAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGID 471 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRL 286 Q+ QAV MD+VTQQNA+LVEE+A+A+ SL+EQA L QA+SVF L Sbjct: 472 QIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVL 517 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 336 bits (861), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 186/309 (60%), Positives = 235/309 (76%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 +A GDLT I+ R E G+L + LK M SL+ VS VR D I T + +I++G+ DL Sbjct: 231 IADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDL 290 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 SSRTEQQAS+LEETA+SME+LT+TV+QN+ NAR+A +A+ AS+ A GG VV VV TM Sbjct: 291 SSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTM 350 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 +I SS KIVDI SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RSA Sbjct: 351 NDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSA 410 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAKEIK LI +SV+++++GS V EAG+TM+EIV +V RVT ++ EI++A +EQ GIE Sbjct: 411 QAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIE 470 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDAQAAQEMAIDVAA 300 QV+QAV MD VTQQNA+LVEE+AAA+ +L++QA EL QAV+ FR+ Q +E + + Sbjct: 471 QVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQKQPRREASPTTLS 530 Query: 301 AAVTPAPAA 309 +TP PAA Sbjct: 531 KGLTPQPAA 539 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 330 bits (847), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 184/286 (64%), Positives = 227/286 (79%), Gaps = 1/286 (0%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 +A GDL+ I V + D T LL+ LK+M ASL IV+ VR + +ATAS+QIA GN DL Sbjct: 229 MAQGDLSRVIAVDADDRT-SLLAKLKEMQASLSGIVATVRNNAESVATASAQIAQGNQDL 287 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 S RTEQQAS+L+ET+++M+EL STV N+ NAR+AN++A AS +A+ GG VVS+VV M Sbjct: 288 SHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMM 347 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 + IN S+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA Sbjct: 348 KGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSA 407 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAAKEIKALI+ SV +VE G+ LV+ AG TM +IV ++QRV+ ++ EIS+A EQ SG+ Sbjct: 408 AAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVS 467 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRL 286 QV QAV MD+ TQQNAALVE++AAA+ SLQ QAQ+L QAV+VF+L Sbjct: 468 QVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513