BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0082.p (684 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aer... 136 2e-31 ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli... 123 1e-27 ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co... 123 1e-27 fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 120 7e-27 YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis 115 3e-25 >PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aeruginosa Length = 474 Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 210/467 (44%), Gaps = 103/467 (22%) Query: 228 AAAGSYALSVEQLAQAHKLSSAGI-NPGT-TFDVGVLAIKTGQGSTALI--KPANHTLAG 283 A AG+Y + V LA + K++ I +P F+ G L I G I +N+TLAG Sbjct: 90 AVAGTYQIQVNSLATSSKIALQAIADPANAKFNSGTLNISVGDTKLPAITVDSSNNTLAG 149 Query: 284 VRDAINAA--EAGVNASIVSDGKQEHLVLTAKESGAQNAIRVSGTGDFAVFASDPSGNVS 341 +RDAIN A EAGV+A+I++D LVL++ ++G I+V + D + GN S Sbjct: 150 MRDAINQAGKEAGVSATIITDNSGSRLVLSSTKTGDGKDIKVEVSDDGS------GGNTS 203 Query: 342 TASVALEKRFGTGTVSLTVGTRNFSLSPASSTAGAAPGLADVASAINEAKAGVTATVRRE 401 + +A + PA+ AP L+D A+A V + Sbjct: 204 LSQLAFD--------------------PAT-----APKLSDGAAA---------GYVTKA 229 Query: 402 GQGDQAVE---RLVLSNGGSDAIRLRGSGDYAMLTASAMGQLQRPQDARLSIDGVAITAP 458 G+ V+ R + SN SD I Sbjct: 230 ANGEITVDGLKRSIASNSVSDVI------------------------------------- 252 Query: 459 GNQIRDAISGVTLNLNKTTRSGDRFTLTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQ 518 GV+ ++ T +G TLTVS D++G K+ V FV A+N LTK + T Sbjct: 253 --------DGVSFDVKAVTEAGKPITLTVSRDDAGVKDNVKKFVEAYNTLTKFINEQT-- 302 Query: 519 VPSKV-RGQAGEQGPLASETMVQALMGQLRNAVLGAVSGNEHGS---LAAIGVSFKKDGT 574 V +KV + G L + V+AL+ +R+ + ++ NE+GS LAA+G++ KDGT Sbjct: 303 VVTKVGEDKNPVTGALLGDASVRALVNTMRSEL---IASNENGSVRNLAALGITTTKDGT 359 Query: 575 LALDDARLGKAGNTSFDALARLFTDKGGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKT 634 L +D+ +L KA + F+ +A FT G+ R + G+L +T LQ +L Sbjct: 360 LEIDEKKLDKAISADFEGVASYFTGDTGLAKRLGDKMKPYTDAQGILDQRTTTLQKTLSN 419 Query: 635 VSDQQAAARERLANLRDSYTNQFNRLNLTLARMQASQSYLTQQLARL 681 V Q+A +RLA L++ T QFN L+ M Q +T LA L Sbjct: 420 VDTQKADLAKRLAALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASL 466 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 19/214 (8%) Query: 8 ISTSAGPLDVANLVNQLVAVESKSRLTPLASKADGFNALLAAYGSLDKALGTYQSALAGL 67 IS G D +LVN++V +E ++ LA+ L A G A+ +Q+AL L Sbjct: 4 ISIGVGSTDYTDLVNKMVNLEGAAKTNQLATLEKTTTTRLTALGQFKSAISAFQTALTAL 63 Query: 68 TATR-FSAQKAAVSNSGNATGSGGEVKTGADAISADINADDSTRALAQKIRSGGFA--SG 124 + F A+ A SN S + A++ ++ A + KI A + Sbjct: 64 NSNAVFMARTAKSSNEDILKASATQ-----SAVAGTYQIQVNSLATSSKIALQAIADPAN 118 Query: 125 HLFRAGDSLAIKVG-TRPPAFITLKADATVTGLRDTINAA--NAGVTASVTRDEAGEHLV 181 F +G +L I VG T+ PA ++ T+ G+RD IN A AGV+A++ D +G LV Sbjct: 119 AKFNSG-TLNISVGDTKLPAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSGSRLV 177 Query: 182 LESNTGGTANTLSIR-------SNNSLSAISFDP 208 L S G + + N SLS ++FDP Sbjct: 178 LSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDP 211 >ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 465 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/320 (30%), Positives = 164/320 (51%), Gaps = 17/320 (5%) Query: 374 AGAAPGLADVASAINEAKAGVTATVRREGQGDQAVERLVLSNGGSDAIRLRGSGDYAM-- 431 + A L+ + AIN AKAGV+A++ G GD + G +A+ L SGD A+ Sbjct: 141 SAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVSGDDALQS 200 Query: 432 ---LTASA----MGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTTRSGDRFT 484 ASA M Q+A+L+++ VAI N I DA+ +TLNLN T +G++ T Sbjct: 201 FMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT-TGNQ-T 258 Query: 485 LTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQ--VPSKVRGQAGEQGPLASETMVQAL 542 LT++ D S A+ A+ +VNA+N+L + ++LT+ V + Q+ G L ++ ++ + Sbjct: 259 LTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTI 318 Query: 543 MGQLRNAVLGAVSGNEHGSLAAIGVSFK-KDGTLALDDARLGKAGNTSFDALARLFT--- 598 QL++ + VS + + +LA IG++ DG L LD +L A + L Sbjct: 319 QTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDG 378 Query: 599 DKGGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKTVSDQQAAARERLANLRDSYTNQFN 658 K G+ T + L L TG++ T G+ +L ++ AA +R+ Y QF Sbjct: 379 KKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQFT 438 Query: 659 RLNLTLARMQASQSYLTQQL 678 +L++ + + ++ SYLTQQ Sbjct: 439 QLDVLMTSLNSTSSYLTQQF 458 >ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7 Length = 465 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/320 (30%), Positives = 164/320 (51%), Gaps = 17/320 (5%) Query: 374 AGAAPGLADVASAINEAKAGVTATVRREGQGDQAVERLVLSNGGSDAIRLRGSGDYAM-- 431 + A L+ + AIN AKAGV+A++ G GD + G +A+ L SGD A+ Sbjct: 141 SAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVSGDDALQS 200 Query: 432 ---LTASA----MGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTTRSGDRFT 484 ASA M Q+A+L+++ VAI N I DA+ +TLNLN T +G++ T Sbjct: 201 FMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT-TGNQ-T 258 Query: 485 LTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQ--VPSKVRGQAGEQGPLASETMVQAL 542 LT++ D S A+ A+ +VNA+N+L + ++LT+ V + Q+ G L ++ ++ + Sbjct: 259 LTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTI 318 Query: 543 MGQLRNAVLGAVSGNEHGSLAAIGVSFK-KDGTLALDDARLGKAGNTSFDALARLFT--- 598 QL++ + VS + + +LA IG++ DG L LD +L A + L Sbjct: 319 QTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDG 378 Query: 599 DKGGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKTVSDQQAAARERLANLRDSYTNQFN 658 K G+ T + L L TG++ T G+ +L ++ AA +R+ Y QF Sbjct: 379 KKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQFT 438 Query: 659 RLNLTLARMQASQSYLTQQL 678 +L++ + + ++ SYLTQQ Sbjct: 439 QLDVLMTSLNSTSSYLTQQF 458 >fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 Length = 468 Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 164/320 (51%), Gaps = 17/320 (5%) Query: 374 AGAAPGLADVASAINEAKAGVTATVRREGQGDQAVERLVLSNGGSDAIRLRGSGDYAM-- 431 + A L+ + AIN AKAGV+A++ G G+ + G +A+ L SGD A+ Sbjct: 144 SAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQS 203 Query: 432 ---LTASA----MGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTTRSGDRFT 484 ASA M Q+A+L+++ VAI N I DA+ +TLNLN T +G++ T Sbjct: 204 FMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT-TGNQ-T 261 Query: 485 LTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQ--VPSKVRGQAGEQGPLASETMVQAL 542 LT++ D S A+ A+ +VNA+N+L + ++LT+ V + Q+ G L ++ ++ + Sbjct: 262 LTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTI 321 Query: 543 MGQLRNAVLGAVSGNEHGSLAAIGVSFK-KDGTLALDDARLGKAGNTSFDALARLFT--- 598 QL++ + VS + + +LA IG++ DG L LD +L A + L Sbjct: 322 QTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDG 381 Query: 599 DKGGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKTVSDQQAAARERLANLRDSYTNQFN 658 K G+ T + L L TG++ T G+ +L ++ AA +R+ Y QF Sbjct: 382 KKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQFT 441 Query: 659 RLNLTLARMQASQSYLTQQL 678 +L++ + + ++ SYLTQQ Sbjct: 442 QLDVLMTSLNSTSSYLTQQF 461 >YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis Length = 466 Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 134/248 (54%), Gaps = 6/248 (2%) Query: 436 AMGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTTRSGDRFTLTVSNDNSGAK 495 A+ Q + +DA LS++GV+IT N I DA GVT+NL T+ G LT+ DN+ K Sbjct: 218 ALTQKVKAEDATLSVNGVSITRQSNTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATK 277 Query: 496 EAVNSFVNAFNALTKSVATLTRQ-VPSKVRGQAGEQGPLASETMVQALMGQLRNAVLGAV 554 A+ SFV+A+N+L + +LT+ V + Q+ G L + ++++ QL++ + + Sbjct: 278 AAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDGTLRSIQTQLKSQLASSQ 337 Query: 555 SGNEHGSLAAIGVSFKKDGTLALDDARLGKAGNTSFDALARLFTDKG---GVVTRSQALL 611 SG + +LA+IG++ DG L ++ +L A +++ F G G T+++ LL Sbjct: 338 SG-DLKTLASIGITQDLDGKLVINADKLNTALTDKPNSVTAFFVGDGETTGFATQTEKLL 396 Query: 612 DKVLGET-GLLAGKTRGLQTSLKTVSDQQAAARERLANLRDSYTNQFNRLNLTLARMQAS 670 + L T G L T G+ TSLK + Q AA + + Y QF +L+ + M ++ Sbjct: 397 NTALDTTLGTLKTATDGINTSLKNLDKQIAATTASIETAIERYKTQFTQLDKLMTSMNST 456 Query: 671 QSYLTQQL 678 S+LTQQ Sbjct: 457 ASFLTQQF 464 Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 23/231 (9%) Query: 15 LDVANLVNQLVAVESKSRLTPLASKADGFNALLAAYGSLDKALGTYQSALAGLTATRFSA 74 LD+ L++QL A E ++RLTPL ++ + + L AYG L QSALA L + Sbjct: 13 LDLNTLLSQLSAAE-QTRLTPLTTQQTSYKSKLTAYGVL-------QSALAKLETASTAL 64 Query: 75 QKAAVSNSGNATGSGGEVKTGAD-AISADINADDSTR-ALAQKIRSGGFASGHLFRAGDS 132 +KA NS +GS D A SA + + T A AQ + S S + G S Sbjct: 65 KKADTLNSTAVSGSNSAFSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSAT-DKLGSS 123 Query: 133 LAIKV------GTRPPAFITLKADAT-VTGLRDTINAANAGVTASVTR-DEAGEHLVLES 184 A + G + P I+L ++ T +TG+RD IN V AS+ + D+ +L L S Sbjct: 124 DATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINKQEGSVNASIMKADDNTYYLALTS 183 Query: 185 NTGGTAN--TLSIRSNNSL-SAISFDPQQQ-RPGAMTQIQAARDATRAAAG 231 GT + T+S+ + +L + +++ P GA+TQ A DAT + G Sbjct: 184 KDTGTQSEMTISVAGDETLNNFLNYTPSSTGGSGALTQKVKAEDATLSVNG 234