BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0074.p (319 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 149 1e-35 PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 133 5e-31 AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 131 2e-30 AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 102 1e-21 mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 101 3e-21 >PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 311 Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 148/291 (50%), Gaps = 1/291 (0%) Query: 22 LQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAA 81 L + A+ Y EV+ GS+ AA LN+ SAISRQ+A LE L L +R +G+ P A Sbjct: 4 LSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEA 63 Query: 82 GELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCRQHKGI 141 GELL AH +Q+ E + + L+AL+GLR+G+V+LA EGF + + ++ F ++ GI Sbjct: 64 GELLVAHYRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGI 123 Query: 142 RFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLA-HRK 200 ++ + A ++E AVDL L + D ++ V R P+ ++ +H LA HR Sbjct: 124 ELEVRMAGANEGVALVKEDAVDLALVYAPVEDGELDVHVDTRQPLDLIIPANHALAGHRG 183 Query: 201 QVSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGIGF 260 V + L LA+ + M +L + L P L +S++ L FV SG G+ F Sbjct: 184 AVPMRALRNESLALIHNSTGMGQLAVIAAQLERIELRPKLRTNSVAVLTNFVKSGIGVAF 243 Query: 261 SAALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNAL 311 L + + G + LP+ + + I S GR L AA A L L Sbjct: 244 MPELTVSHEIEAGHIRCLPLAHPALRDARARIVSHKGRELTVAAIACLEHL 294 >PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 313 Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 146/285 (51%), Gaps = 6/285 (2%) Query: 26 AVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAAGELL 85 A+ YF V R SI EAA LNVASSA++RQI +LE E+ PLF+R+ G+R AGE+ Sbjct: 11 AIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTGAGEIF 70 Query: 86 AAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCRQHKGIRFQL 145 A H + ER+ +EL AL+GLR G V++AT E + +P ++ ++ I + Sbjct: 71 ARHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPDITVGV 130 Query: 146 SVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHRKQVSLS 205 ++ + + + + GAVDLGL F + D++ + A++ P H LA + ++ + Sbjct: 131 TLLGSQAIPEAVSSGAVDLGLAFALPRSADLQQVSVGHFRLGAIVSPQHPLARHQAIAFA 190 Query: 206 ELAPYPLAMPQKNITMRRLIDACCSRRNVLLEP---TLAADSISALLCFVMSGDGIGFSA 262 + + L M + +++ L+ A RR L EP L + S+ G G+ F Sbjct: 191 DCVEHGLIMAKSELSIHHLL-APLQRR--LREPRRAVLESSSLELSRQLARRGLGVAFQT 247 Query: 263 ALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAF 307 L I + +G+L LP++D L + GR LP A A Sbjct: 248 RLGIEADIAQGELRFLPLKDNGGIHSDLGLYVRTGRYLPVAVDAL 292 >AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 138/283 (48%) Query: 22 LQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAA 81 +Q A+ YF E+VR S+ AA LNVA +A+SRQI LE +PL ER SRG++ AA Sbjct: 33 MQLRALMYFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLTAA 92 Query: 82 GELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCRQHKGI 141 GELLAA A + E + + + LKGL+RG V + + + QF ++ + Sbjct: 93 GELLAARAGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYPKL 152 Query: 142 RFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHRKQ 201 RF++ + +A + + DL ++ +KV R + H LA + + Sbjct: 153 RFEVHITSARQAMEALGAAEADLVVSLFAPKLSGVKVRSRTRISYDVIFPAGHALAAQPE 212 Query: 202 VSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGIGFS 261 VSL ELA PLA+P K+ R+ D + + L+P S+ L V+ Sbjct: 213 VSLKELAGMPLALPDKSFAARQAFDTLFADAGIELDPVFITSSLEMLKELVLGNAAATLL 272 Query: 262 AALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAA 304 AL + + +R GQ+ A+P+ K Q+++ R L AA Sbjct: 273 PALSVAREIRSGQMVAVPLAGKKGIHTQIDLCVAPDRQLSFAA 315 >AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 3/233 (1%) Query: 27 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAAGELLA 86 +R F VV S AA+ L+++ A++R+I +LE + PL ER +R + P A G+ + Sbjct: 10 LRAFQAVVELESFHRAADALHISQPALTRRIQKLEQAIGAPLLERTTRHVAPTAMGQEVM 69 Query: 87 AHALRQQLEAERIGNELAALKGL-RRGEVKLATTEGFALEFVPAAIEQFCRQHKGIRFQL 145 +R+ LE E G+ A G RRG + +A A F+P I+ F +Q+ IR ++ Sbjct: 70 P-LVRRMLE-EFDGSLFAMKDGAQRRGLITMACVPTAAFYFLPTVIKTFSKQYPHIRLRI 127 Query: 146 SVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHRKQVSLS 205 A Q + G V+ G+ DPD+ E P + MR DH LA + + Sbjct: 128 RDLTANEGLQAVARGEVEFGINLMGNSDPDLAFEPLIDDPFVLAMRKDHPLAAFETIQWD 187 Query: 206 ELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGI 258 +L P+PL + ++ R L+D +R N+ L ++ L V +G GI Sbjct: 188 QLEPHPLVVVDRSSGNRTLLDGALARHNLKLNWFYEVTHLNTSLGLVEAGLGI 240 >mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 134/293 (45%), Gaps = 14/293 (4%) Query: 27 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAAGELLA 86 +R FL VV S AA L+++ A+SR+I +LE + P+ ER +R + A G L Sbjct: 10 LRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSATALGIELV 69 Query: 87 AHALRQQLEAERIGNELAALKGL---RRGEVKLATTEGFALEFVPAAIEQFCRQHKGIRF 143 +R+ LE L A++ + R G V +A A F+P I QF ++ IRF Sbjct: 70 P-LVRRMLE--EFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYPNIRF 126 Query: 144 QLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHRKQVS 203 ++ A Q + G V+ G+ DPD+ + P + R DH LA + V Sbjct: 127 RILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLAAKPSVG 186 Query: 204 LSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGIGFSAA 263 ++L PY L ++ R L+DA ++ N+ L +S L V +G GI + Sbjct: 187 WADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLGI---SV 243 Query: 264 LPIRKLVREGQ---LAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNALIA 313 LP R G L PIRD +++ + + G TL AA FL LI Sbjct: 244 LP-RMATPGGDHPFLITRPIRDPEISR-TIGVVRRRGGTLSPAAERFLKMLIG 294