BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0007.p (193 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0292 [TK] COG2197 Response regulator containing a CheY-like r... 213 2e-55 VC1213 [TK] COG2197 Response regulator containing a CheY-like re... 139 5e-33 RSc0192 [TK] COG2197 Response regulator containing a CheY-like r... 136 2e-32 uvrY [TK] COG2197 Response regulator containing a CheY-like rece... 132 5e-31 STM1947 [TK] COG2197 Response regulator containing a CheY-like r... 132 7e-31 >RSc0292 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 210 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 149/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EE + +RT +D+V+LDI+MPD++G++ LK +++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDRNGIDTLKLVRQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210 >VC1213 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 214 Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + I ++ M++ GEA + EEA++ RT D++L+D+ MP G+E K++ R P++ Sbjct: 17 IRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDI 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAE--LLT 118 +++L++H E+ + +V+++GA+GY+ K A E+VNAI + G +YIS +A+ L+ Sbjct: 77 KIIVLTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALS 136 Query: 119 SEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTN 178 SE P + LS+RE +I + +GQ VT I+++L LS KTV++YR R+ K+++ Sbjct: 137 QFSPASENPFAD-LSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNING 195 Query: 179 NADIIYYAIKNNLID 193 + ++ + AI++ ++D Sbjct: 196 DVELTHLAIRHGILD 210 >RSc0192 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 215 Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/193 (37%), Positives = 123/193 (63%), Gaps = 1/193 (0%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 V H + E+ EAS + ++LVR +++LD++MP +SG+E+L+Q+ + P + Sbjct: 17 VRHILERAGDFEVACEASDGTQVLQLVRDHQPQVIVLDLSMPGRSGLELLRQLHDDHPTV 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLT-S 119 VL+L+MH E +Y + R+GA+ Y+ KE+ ATELV A+ + RG Y+S +AE L S Sbjct: 77 RVLVLTMHAEEQYVARAFRAGAAAYLTKESAATELVTALQKVARGGTYVSPPMAEKLAHS 136 Query: 120 EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNN 179 S++ H LS RE E++ +L G+ +T+IA LC+S KT+STY+ R++ K+ +++ Sbjct: 137 LGETSDEAAHMRLSDREMEVYRRLVLGEPLTEIAASLCVSAKTISTYKMRLMDKLQLSSE 196 Query: 180 ADIIYYAIKNNLI 192 A ++ YAI++ L Sbjct: 197 AALVRYAIRHRLF 209 >uvrY [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 218 Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 125/196 (63%), Gaps = 4/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + + +I +++ GEAS E+A++ RT D+VL+D++MP G+E ++I R ++ Sbjct: 17 IRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADV 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAE---LL 117 ++ML++H E+ +V+++GA+GY+ K A E+V+AI ++ G +YI+ +A+ L Sbjct: 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALS 136 Query: 118 TSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 EP +E P +LS+RE +I + +GQ V +I+++L LS KTV++YR R+ K+++ Sbjct: 137 QIEPEKTESPF-ASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIH 195 Query: 178 NNADIIYYAIKNNLID 193 + ++ + AI++ L + Sbjct: 196 GDVELTHLAIRHGLCN 211 >STM1947 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 218 Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + + +I +++ GEA E+A++ RT D+VL+D+ MP G+E ++I R ++ Sbjct: 17 IRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKIARSTADI 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAE---LL 117 V+ML++H E+ +V+++GA+GY+ K A E+V+AI ++ G +YI+ +A+ L Sbjct: 77 KVIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALS 136 Query: 118 TSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 EP +E P +LS+RE +I + +GQ V +I+++L LS KTV++YR R+ K+++ Sbjct: 137 QIEPAKTETPF-ASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIH 195 Query: 178 NNADIIYYAIKNNLID 193 + ++ + AI++ L + Sbjct: 196 GDVELTHLAIRHGLCN 211