BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0002.p         (104 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1323 [S] COG4575 Uncharacterized conserved protein Pae Pseudom...    70   2e-12
RSc0753 Non COG                                                        64   1e-10

>PA1323 [S] COG4575 Uncharacterized conserved protein Pae Pseudomonas
           aeruginosa
          Length = 110

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%)

Query: 11  TDVQSLLQQAQDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQAAVVETGRQIVTS 70
           +++Q LL +A  + A++A   G KAD  RA    LLE+A +      +AV E  R  V +
Sbjct: 20  SELQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAERSRHAVDA 79

Query: 71  TDDYVQSNPWRAIAIGTGIGLLVGLAVGR 99
           T+ Y+ +NPW+ +AI T +GLL G  +GR
Sbjct: 80  TESYIGANPWQTVAITTAVGLLAGFLLGR 108


>RSc0753 Non COG
          Length = 108

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%)

Query: 11 TDVQSLLQQAQDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQAAVVETGRQIVTS 70
          TDV+++L  A+ L  +AA+ +G+KA +LR     LL QA   AQD Q AVV   +    +
Sbjct: 19 TDVKTVLSDAEALLKQAASTSGEKAAELRERGMGLLRQAKEKAQDLQDAVVTKSKAAARA 78

Query: 71 TDDYVQSNPWRAIAIG 86
          TDDYV  +PW+A+ + 
Sbjct: 79 TDDYVHDHPWQAVGVA 94