BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0019.p (281 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA1675_1 [ET] COG0834 ABC-type amino acid transport/signal trans... 84 3e-16 artJ [ET] COG0834 ABC-type amino acid transport/signal transduct... 82 1e-15 CC1441 [ET] COG0834 ABC-type amino acid transport/signal transdu... 79 1e-14 ZartJ [ET] COG0834 ABC-type amino acid transport/signal transduc... 78 2e-14 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 78 2e-14 >SA1675_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sau Staphylococcus aureus N315 Length = 236 Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 8/195 (4%) Query: 67 EWGGFMIDFAKSLAASLNVKLDITETTWGNSVLDLQTHKIDLFF-GMNPTPARREVIGFT 125 E+ G ID AK +A N+KL I ++ + + L+T KID+ GM TP R++ + F+ Sbjct: 21 EYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFS 80 Query: 126 EPLFLNAFTVVSKK----EFKTWADLNKPEVKIAVDIGSSHDQMISRVCPNATIVRLEKA 181 + + ++ KK E+K D N K+ G+ +++ NA+I L + Sbjct: 81 DSYMMTKNIMLVKKDKVNEYKDIKDFNNK--KVGAQKGTEQEKIAQTEIENASITSLSRL 138 Query: 182 DDATLALQTGRVDAQVLVWLLALNILKKNPALGKMYVPQPLEATSTNIGVPKEEDKAWVE 241 D LAL++G+V+ V+ +A LK+NP LG V E T I VPK+ K + Sbjct: 139 PDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPK-LLS 197 Query: 242 TINKWIAAERAAGKI 256 INK I + G I Sbjct: 198 QINKTIKEVKDKGLI 212 >artJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Eco Escherichia coli K12 Length = 243 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 12/198 (6%) Query: 64 ASGEWGGFMIDFAKSLAASLNVKLDITETTWGNSVLDLQTHKID-LFFGMNPTPARREVI 122 A+ E GF ID AK+L + + T + + + L+ K D + GM+ TP R + + Sbjct: 39 ANNEIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQV 98 Query: 123 GFTEPLFLNAFTVVSKKE-FKTWADLNKPEVKIAVDIGSSHDQMISRVCPNATIVRLEKA 181 FT P + N+ V++KK+ +KT+ADL +I ++ G++H + I P V + Sbjct: 99 SFTTPYYENSAVVIAKKDTYKTFADLKGK--RIGMENGTTHQKYIQDQHPEVKTVSYDSY 156 Query: 182 DDATLALQTGRVDAQVLVWLLALNILKKNPALG----KMYVPQPLEATSTNIGVP-KEED 236 +A + L+ GR+D + LK NP LG K+ PQ T +G+ + ++ Sbjct: 157 QNAFIDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYF---GTGLGIAVRPDN 213 Query: 237 KAWVETINKWIAAERAAG 254 KA +E +N +AA +A G Sbjct: 214 KALLEKLNNALAAIKADG 231 >CC1441 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ccr Caulobacter vibrioides Length = 261 Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 13/222 (5%) Query: 40 RVQRTKTLRIGAVRGAAPYYNKDLASGEWGGFMIDFAKSLAASLNVKLDITETTWGNSVL 99 R++ + LR+G + G P +N SG+ GF +DFAK+LA L VK + + + + Sbjct: 34 RIKASGKLRVG-LEGTYPPFNFQDKSGQLAGFEVDFAKALAEQLGVKAEFSPAPFAGLLG 92 Query: 100 DLQTHKIDLFFG-MNPTPARREVIGFTEPLFLNAFTVVSKKEFKTWADLNKPE----VKI 154 L++ +ID+ + TP R+ F+EP ++ +++ K PE K+ Sbjct: 93 SLESGRIDVVINQITITPDRQAKYDFSEPYTVSGIQIIA---LKGKPAPTGPEGLTGKKV 149 Query: 155 AVDIGSSHDQMISRVCPNATIVRLEKADDATLALQTGRVDAQVLVWLLALNILKKNPALG 214 V +G++++Q + P A + + L+ GR+DA + L+A + +K +P Sbjct: 150 GVGLGTNYEQWLRANVPTADVRTYDDDPTKYQDLRAGRIDAVLNDRLVAADFVKTSPEF- 208 Query: 215 KMYVPQPLEATSTNIGVPKEEDKAWVETINKWIAAERAAGKI 256 + QP A + GV ++D A IN+ I A RA GK+ Sbjct: 209 -VASGQPFAAQGS--GVAMQKDPALKVVINQAINALRANGKL 247 >ZartJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain EcZ Escherichia coli O157:H7 EDL933 Length = 260 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 57 PYYNKDLASGEWGGFMIDFAKSLAASLNVKLDITETTWGNSVLDLQTHKID-LFFGMNPT 115 P+ + D A+ + GF ID AK+L + + T + + + L+ K D + GM+ T Sbjct: 50 PFESMD-ANNQIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDIT 108 Query: 116 PARREVIGFTEPLFLNAFTVVSKKE-FKTWADLNKPEVKIAVDIGSSHDQMISRVCPNAT 174 P R + + FT P + N+ V++KK+ +KT+ADL +I ++ G++H + I P Sbjct: 109 PDRSKQVSFTTPYYENSAVVIAKKDTYKTFADLKGK--RIGMENGTTHQKYIQDQHPEVK 166 Query: 175 IVRLEKADDATLALQTGRVDAQVLVWLLALNILKKNPALG----KMYVPQPLEATSTNIG 230 V + +A + L+ R+D + LK NP LG K+ PQ T +G Sbjct: 167 TVSYDSYQNAFIDLKNSRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYF---GTGLG 223 Query: 231 VP-KEEDKAWVETINKWIAAERAAG 254 + + ++KA +E +N +AA +A G Sbjct: 224 IAVRPDNKALLEKLNNALAAIKADG 248 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Tma Thermotoga maritima Length = 246 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 93/185 (50%), Gaps = 11/185 (5%) Query: 65 SGEWGGFMIDFAKSLAASLNVKLDITETTWGNSVLDLQTHKIDLFF-GMNPTPARREVIG 123 +G GF +D AK +A L V+L I + T+ + L T KID+ GM T R++V+ Sbjct: 47 NGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVA 106 Query: 124 FTEPLFLNAFTVVSKKEF----KTWADLNKPEVKIAVDIGSSHDQMISRVCPNATIVRLE 179 F++P F +V +K+ KT+ DL V AV IG++ D +S+ +VR + Sbjct: 107 FSDPYFDAGQVIVVRKDSDFRPKTYEDLVGKTV--AVQIGTTGDIEVSK-YDGIKVVRFD 163 Query: 180 KADDATLALQTGRVDAQVLVWLLALNILKKNPALGKMYVPQPLEATSTNIGVPKEEDKAW 239 K DA L L+ GR DA VL A + KNP L + L + I V K ED Sbjct: 164 KFTDAFLELKRGRADAVVLDSATARAFVAKNPDL--VISSGVLSSEQYGIAVRK-EDTDL 220 Query: 240 VETIN 244 +E IN Sbjct: 221 LEFIN 225