BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0012.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0829 [E] COG0765 ABC-type amino acid transport system, permea... 143 3e-34 glnP [E] COG0765 ABC-type amino acid transport system, permease ... 142 4e-34 ZglnP [E] COG0765 ABC-type amino acid transport system, permease... 142 4e-34 ECs0888 [E] COG0765 ABC-type amino acid transport system, permea... 142 4e-34 sll1270_2 [E] COG0765 ABC-type amino acid transport system, perm... 140 2e-33 >STM0829 [E] COG0765 ABC-type amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 219 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 133/217 (61%), Gaps = 1/217 (0%) Query: 3 QWDFGSLWQFRSIIGIGFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEV 62 Q+D+ ++W ++ G TL +V +A GL++GL G R F + F+E+ Sbjct: 2 QFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLAAGFARTFGGWFANHIALVFIEI 61 Query: 63 FRCTPVLVQLVWFYYALPVLLG-IEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQS 121 R TP++VQ+++ Y+ALP+ + + +AA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++R + ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEIYTLVAIIYFLILLPATIWAKRLENRLSV 218 +R LEI++ VA+ Y +I L + +RLE R+ + Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI 218 >glnP [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 219 Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 134/217 (61%), Gaps = 1/217 (0%) Query: 3 QWDFGSLWQFRSIIGIGFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEV 62 Q+D+ ++W ++ G TL +V +A GL++GL+ G R + F+EV Sbjct: 2 QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV 61 Query: 63 FRCTPVLVQLVWFYYALPVLLG-IEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQS 121 R TP++VQ+++ Y+ALP+ + + TAA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++R++ ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEIYTLVAIIYFLILLPATIWAKRLENRLSV 218 +R LEI++ VA+ Y +I L + +RLE R+ + Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI 218 >ZglnP [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 134/217 (61%), Gaps = 1/217 (0%) Query: 3 QWDFGSLWQFRSIIGIGFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEV 62 Q+D+ ++W ++ G TL +V +A GL++GL+ G R + F+EV Sbjct: 2 QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV 61 Query: 63 FRCTPVLVQLVWFYYALPVLLG-IEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQS 121 R TP++VQ+++ Y+ALP+ + + TAA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++R++ ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEIYTLVAIIYFLILLPATIWAKRLENRLSV 218 +R LEI++ VA+ Y +I L + +RLE R+ + Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI 218 >ECs0888 [E] COG0765 ABC-type amino acid transport system, permease component Ecs Escherichia coli O157:H7 Length = 219 Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 134/217 (61%), Gaps = 1/217 (0%) Query: 3 QWDFGSLWQFRSIIGIGFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEV 62 Q+D+ ++W ++ G TL +V +A GL++GL+ G R + F+EV Sbjct: 2 QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV 61 Query: 63 FRCTPVLVQLVWFYYALPVLLG-IEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQS 121 R TP++VQ+++ Y+ALP+ + + TAA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++R++ ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEIYTLVAIIYFLILLPATIWAKRLENRLSV 218 +R LEI++ VA+ Y +I L + +RLE R+ + Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI 218 >sll1270_2 [E] COG0765 ABC-type amino acid transport system, permease component Syn Synechocystis Length = 255 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 126/211 (59%), Gaps = 6/211 (2%) Query: 12 FRSIIGIGFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEVFRCTPVLVQ 71 FR++ G + T+ T + GL+ G V + +S + R +VE FR TP+LVQ Sbjct: 32 FRNLFK-GSILTVLLTAFSVFFGLIGGTGVAIALISDIKPLQLIFRIYVEFFRGTPMLVQ 90 Query: 72 LVWFYYALPVL-----LGIEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQSEAGWA 126 L Y+ LP L LGI + AA+++L+L A+ +EIIRGGI SID GQ EA + Sbjct: 91 LFIIYFGLPALFKEIGLGITIDRFPAAIIALSLNVAAYLAEIIRGGIQSIDQGQWEACES 150 Query: 127 LGMTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYR 186 LGM+ +Q MK VI PQAF+R+ PPL N+ I +K+TSL +V+ +L +GQ+I TYR Sbjct: 151 LGMSPWQTMKEVIFPQAFRRILPPLGNEFITLIKDTSLTAVIGFQELFREGQLIVATTYR 210 Query: 187 PLEIYTLVAIIYFLILLPATIWAKRLENRLS 217 E+Y VA++Y L+ ++ K LEN + Sbjct: 211 AFEVYIAVALVYLLLTTISSFVFKWLENYMD 241