BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0010.p (421 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 396 e-110 AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 390 e-108 mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 390 e-108 PA5304 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) P... 383 e-106 VC0786 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) V... 382 e-105 >BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Bme Brucella melitensis Length = 416 Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/415 (47%), Positives = 266/415 (64%), Gaps = 5/415 (1%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHEVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M+I +LG+G++GVTTAY+L + GHEV V++R A ETS NAG V P YA+PWAAPG+ Sbjct: 1 MQITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGI 60 Query: 61 PAKSLKWSVQSWLGIEAALRFTPRLDAHQWKWLKTFLAQCTPERYAVNKARMGRLARYSH 120 P K+ KW Q A L D Q++WL LA CT RY +NK RM R+A YS Sbjct: 61 PLKAAKWLFQK----HAPLILRLTTDPVQYRWLLQMLANCTDSRYKINKTRMVRVAEYSR 116 Query: 121 SQLKQIRERLDIRYEQTTGGNLQLFRTQEGLDNAGLSTKVLAEAGVPFELLDADGCVAFD 180 L ++R+ I Y+Q + G LQLFR Q LD G +VL + GVPFE+LD DGCV + Sbjct: 117 DCLIELRKDTGIEYDQRSQGTLQLFREQYQLDGIGKDIEVLRQDGVPFEVLDRDGCVNVE 176 Query: 181 PGLHAARHELKGGLLLPMDETGNCPLFARALAGWLQAHGVEFHLSTEVQAIEVAGGQVSG 240 P L A+ + GGL LP DETG+C F ALA + GV+F ++++ ++GG++SG Sbjct: 177 PALAHAKDKFVGGLRLPNDETGDCFKFTNALAKIAEGLGVKFRFGVNIKSLLMSGGKISG 236 Query: 241 LRTPTGTLRADAYVVACASASVPMLKPLGLDLPIYPVKGYAITVPVADPKSAPRSGVMDE 300 + T G + A+ YVVA S + ++K LGL+ PIYPVKGY+IT P+ D AP S V+DE Sbjct: 237 VETSEGIVTAERYVVALGSYTPALIKALGLNAPIYPVKGYSITAPIVDESRAPVSTVLDE 296 Query: 301 YYKVAITRMGNHIRAAGTAEIGSWDTRVTPRDCATALKSLKNLYPQGADLAKVEYWAGLR 360 YK+AITR+G+ IR G AE+ + + AT S+ +L+P G DL +W+GLR Sbjct: 297 SYKIAITRLGDRIRVGGMAEVSGFTDDLPAARRATLDLSVTDLFP-GGDLKAATFWSGLR 355 Query: 361 PMTPDGAPLIGATRYANLWLNAGHGSNGWTTACGSSAIIADKISGVASAIASADL 415 PMTPD P+IG TRY NL++NAGHG+ GWT ACGS ++AD ISG + I + DL Sbjct: 356 PMTPDSTPIIGGTRYDNLFINAGHGTLGWTMACGSGRLLADLISGNKADIRADDL 410 >AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 418 Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/419 (46%), Positives = 262/419 (62%), Gaps = 4/419 (0%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHEVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M + +LGAG+VGVT+A++L + GH+V V++R+ A ETS NAG V P Y++PWAAPG+ Sbjct: 1 MNVTILGAGVVGVTSAWYLAKAGHKVTVIDRQPAAALETSFANAGEVSPGYSSPWAAPGI 60 Query: 61 PAKSLKWSVQSWLGIEAALRFTPRLDAHQWKWLKTFLAQCTPERYAVNKARMGRLARYSH 120 P K++KW A L P D W+W+ L CT RYA+NK+RM R+A YS Sbjct: 61 PMKAMKWLFMK----HAPLIIRPTADPAAWRWMSQMLRNCTSARYAINKSRMVRVAEYSR 116 Query: 121 SQLKQIRERLDIRYEQTTGGNLQLFRTQEGLDNAGLSTKVLAEAGVPFELLDADGCVAFD 180 L +RE I Y+Q G L++FRTQ+ D G VL GVPFE+LD DGC A + Sbjct: 117 DCLMALREETGIDYDQRMQGTLEVFRTQKQFDAIGKDVDVLTAGGVPFEILDRDGCAAIE 176 Query: 181 PGLHAARHELKGGLLLPMDETGNCPLFARALAGWLQAHGVEFHLSTEVQAIEVAGGQVSG 240 PGL A+ ++ GGL LP DETG+C +F LA + GV F T + V GG++ Sbjct: 177 PGLAPAKEKIVGGLRLPGDETGDCFMFTTELARMAEEAGVTFLYDTGIMRPIVEGGRIKA 236 Query: 241 LRTPTGTLRADAYVVACASASVPMLKPLGLDLPIYPVKGYAITVPVADPKSAPRSGVMDE 300 + T G + AD +V A S S ++ LGL LP+YPVKGY+ITVP+ + AP S VMDE Sbjct: 237 VETTRGLIEADIFVAALGSYSPQFVRQLGLTLPVYPVKGYSITVPIVKEERAPVSTVMDE 296 Query: 301 YYKVAITRMGNHIRAAGTAEIGSWDTRVTPRDCATALKSLKNLYPQGADLAKVEYWAGLR 360 +KVAITR+G+ IRA G AEI + + T S+++L+ D ++ ++W GLR Sbjct: 297 TFKVAITRLGSRIRAGGMAEIAGFSKDLPAARQETLAHSVEDLFGGAGDQSQAKFWCGLR 356 Query: 361 PMTPDGAPLIGATRYANLWLNAGHGSNGWTTACGSSAIIADKISGVASAIASADLEPQR 419 PMTPDG P+IGATRY+NL+LN GHG+ GWT +CGS+ ++AD ISG I + DL R Sbjct: 357 PMTPDGTPVIGATRYSNLYLNTGHGTLGWTMSCGSARVLADLISGNKPEIDTHDLAISR 415 >mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo Mesorhizobium loti Length = 418 Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/419 (46%), Positives = 260/419 (62%), Gaps = 4/419 (0%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHEVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M+I+VLG G++GVTTAY+L E GHEV V++R+ A ETS NAG + P YA+PWA PG+ Sbjct: 1 MQIMVLGGGVIGVTTAYYLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGI 60 Query: 61 PAKSLKWSVQSWLGIEAALRFTPRLDAHQWKWLKTFLAQCTPERYAVNKARMGRLARYSH 120 P K++KW + L P D H W WL L CT ERYA+NK+RM LA YS Sbjct: 61 PLKAIKWLLMK----HGPLVVRPAFDPHMWTWLVKMLRNCTTERYAINKSRMVPLAEYSR 116 Query: 121 SQLKQIRERLDIRYEQTTGGNLQLFRTQEGLDNAGLSTKVLAEAGVPFELLDADGCVAFD 180 LK +RE I Y++ T G LQLFRTQ+ LD G +VL + GV +E+LD DGC+A + Sbjct: 117 DTLKALREATGITYDERTQGTLQLFRTQKQLDGTGGDVEVLKKYGVSYEILDQDGCIAAE 176 Query: 181 PGLHAARHELKGGLLLPMDETGNCPLFARALAGWLQAHGVEFHLSTEVQAIEVAGGQVSG 240 P L R + GGL LP DETG+C +F LA A GV+F T + + + +V+ Sbjct: 177 PALGGVREKFVGGLRLPHDETGDCKMFTEKLAELCVARGVKFEYDTTIWRVLRSRNRVAN 236 Query: 241 LRTPTGTLRADAYVVACASASVPMLKPLGLDLPIYPVKGYAITVPVADPKSAPRSGVMDE 300 L T G ++AYV+A S S ++ + +P+YPVKGY+ITVP+ D AP S VMDE Sbjct: 237 LSTSKGFKASEAYVMALGSYSAGFMRRMKRSIPVYPVKGYSITVPIKDADVAPVSTVMDE 296 Query: 301 YYKVAITRMGNHIRAAGTAEIGSWDTRVTPRDCATALKSLKNLYPQGADLAKVEYWAGLR 360 YKVAITR+G+ IR GTAEI +D R+ T S+ +L+P + + +W GLR Sbjct: 297 TYKVAITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGAGAMREATFWCGLR 356 Query: 361 PMTPDGAPLIGATRYANLWLNAGHGSNGWTTACGSSAIIADKISGVASAIASADLEPQR 419 PMTPDG PLIG T +NL+LN GHG+ GWT ACGS+ ++AD +S I + L +R Sbjct: 357 PMTPDGPPLIGRTELSNLFLNTGHGTLGWTMACGSAKVLADIMSNKVPEIDARALAQER 415 >PA5304 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Pae Pseudomonas aeruginosa Length = 432 Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/419 (45%), Positives = 261/419 (62%), Gaps = 4/419 (0%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHEVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 MR++VLG+G++G +AY+L G EVVVV+R+ A ETS NAG V P YA+PWAAPG+ Sbjct: 1 MRVLVLGSGVIGTASAYYLARAGFEVVVVDRQDGPALETSFANAGQVSPGYASPWAAPGI 60 Query: 61 PAKSLKWSVQSWLGIEAALRFTPRLDAHQWKWLKTFLAQCTPERYAVNKARMGRLARYSH 120 P K++KW ++ + A++ T D Q+ W+ L CT ERYAVNK RM RL+ YS Sbjct: 61 PLKAMKWLLEKHAPL--AIKLTS--DPSQYAWMLQMLRNCTAERYAVNKERMVRLSEYSR 116 Query: 121 SQLKQIRERLDIRYEQTTGGNLQLFRTQEGLDNAGLSTKVLAEAGVPFELLDADGCVAFD 180 L ++R I YE T G QLFRTQ LD AG VL +GVP+E+LD DG + Sbjct: 117 DCLDELRAETGIAYEGRTLGTTQLFRTQAQLDAAGKDIAVLERSGVPYEVLDRDGIARVE 176 Query: 181 PGLHAARHELKGGLLLPMDETGNCPLFARALAGWLQAHGVEFHLSTEVQAIEVAGGQVSG 240 P L +L G L LP D+TG+C LF LA + GVEF ++ ++ AG +++G Sbjct: 177 PALAKVADKLVGALRLPNDQTGDCQLFTTRLAEMAKGLGVEFRFGQNIERLDFAGDRING 236 Query: 241 LRTPTGTLRADAYVVACASASVPMLKPLGLDLPIYPVKGYAITVPVADPKSAPRSGVMDE 300 + L AD YV+A S S +LKPLG+ P+YP+KGY++TVP+ +P+ AP S ++DE Sbjct: 237 VLVNGELLTADHYVLALGSYSPQLLKPLGIKAPVYPLKGYSLTVPITNPEMAPTSTILDE 296 Query: 301 YYKVAITRMGNHIRAAGTAEIGSWDTRVTPRDCATALKSLKNLYPQGADLAKVEYWAGLR 360 YKVAITR IR G AEI +D + PR T +LYP+G D+++ +W GLR Sbjct: 297 TYKVAITRFDQRIRVGGMAEIAGFDLSLNPRRRETLEMITTDLYPEGGDISQATFWTGLR 356 Query: 361 PMTPDGAPLIGATRYANLWLNAGHGSNGWTTACGSSAIIADKISGVASAIASADLEPQR 419 P TPDG P++GATRY NL+LN GHG+ GWT ACGS +AD ++ I++ L+ R Sbjct: 357 PATPDGTPIVGATRYRNLFLNTGHGTLGWTMACGSGRYLADLMAKKRPQISTEGLDISR 415 >VC0786 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Vch Vibrio cholerae Length = 421 Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/416 (44%), Positives = 265/416 (63%), Gaps = 4/416 (0%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHEVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M ++VLG+G+VG+T+A++L + GH+V VV+R+ A ETS NAG + Y++PWAAPG+ Sbjct: 2 MEVLVLGSGVVGLTSAWYLAQAGHDVTVVDRQPRGAEETSFANAGQISYGYSSPWAAPGI 61 Query: 61 PAKSLKWSVQSWLGIEAALRFTPRLDAHQWKWLKTFLAQCTPERYAVNKARMGRLARYSH 120 P K+LKW ++ A L+ P LD W+ L C RY VNK+RM +A YS Sbjct: 62 PQKALKWMLEK----HAPLKIQPSLDPALLSWMGKMLLNCQLSRYQVNKSRMLAIANYSR 117 Query: 121 SQLKQIRERLDIRYEQTTGGNLQLFRTQEGLDNAGLSTKVLAEAGVPFELLDADGCVAFD 180 LK + + + Y+ G LQ+FR ++ L ++LA++GV FELL+ C+ + Sbjct: 118 ECLKALNQTYSLDYQGRQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFELLNVAQCLTHE 177 Query: 181 PGLHAARHELKGGLLLPMDETGNCPLFARALAGWLQAHGVEFHLSTEVQAIEVAGGQVSG 240 PGL + +L GGL LP DETG+C LF + L + GV FH +Q + G ++ G Sbjct: 178 PGLAPVQEKLVGGLWLPDDETGDCYLFCQQLTELAKQQGVRFHFDCHIQQLVCEGKKIIG 237 Query: 241 LRTPTGTLRADAYVVACASASVPMLKPLGLDLPIYPVKGYAITVPVADPKSAPRSGVMDE 300 ++T G L+ADAYVVA S S +LKPLG+++P+YPVKGY++T+P+ D K AP+S VMDE Sbjct: 238 VQTDLGLLKADAYVVALGSYSTSLLKPLGIEIPVYPVKGYSLTLPIIDEKFAPQSTVMDE 297 Query: 301 YYKVAITRMGNHIRAAGTAEIGSWDTRVTPRDCATALKSLKNLYPQGADLAKVEYWAGLR 360 YKVA+TR + IR AGTAE+ +D + AT ++L+P G D AK ++W G R Sbjct: 298 TYKVALTRFSDRIRVAGTAELAGFDPAIPEARKATIEMVARDLFPHGGDFAKGQFWTGFR 357 Query: 361 PMTPDGAPLIGATRYANLWLNAGHGSNGWTTACGSSAIIADKISGVASAIASADLE 416 PMTPDG P+IGAT Y NL+ N GHG+ GWT ACGS++I+AD ++ S ++ L+ Sbjct: 358 PMTPDGTPIIGATPYTNLYTNTGHGTLGWTMACGSASILADVLTHGESPLSRLGLD 413