BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0023.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella mel... 227 2e-59 PA3630 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 226 4e-59 SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 226 7e-59 mlr7786 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 219 5e-57 RSp1146 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 218 1e-56 >BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 325 Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 ++ L ++E F V GS AA LG+S A VS+ + LE RLG+RL+QRTTR+++LTE Sbjct: 21 MSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTE 80 Query: 61 AGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLAPLWPIFLERHPE 120 AG Y ER I+A +EEA+ + SA G L+I+AP TFG +H+AP F+ + + Sbjct: 81 AGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANAD 140 Query: 121 VELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICASPGYLEQHGTPRH 180 + +++ LSD +VDI+ +GYDLAIRI L+DSTL+ R+L A+P YL++ GTP+ Sbjct: 141 LTVNMQLSDEMVDIVGDGYDLAIRIGELSDSTLVARRLAPVRRIFVAAPRYLKERGTPQT 200 Query: 181 PHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQP 240 +L H ++ H D W+ GP+GP+ +R + N+ + +A L G+GI ++ Sbjct: 201 IEDLQDHICLA---PHNNDPWRLEGPKGPIVIRPTGPLQTNSSEIVREAVLAGLGIAQRS 257 Query: 241 TFMIDQYLRSGQLVPLLTDYTVP-DLGIYAVYPSRAHLPAKVRAMLDFLSEAFAQV-HW 297 T+ + L +G+LV +L DY ++ I+AVYPS+ LPAKVR +D+L++ + V +W Sbjct: 258 TWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYLADLYGPVPYW 316 >PA3630 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 181/296 (61%), Gaps = 4/296 (1%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 +N+ ++ F+AVA+ G F AA+ +G+S + +SR V LE RL +RL+ R+TRR+SL+E Sbjct: 1 MNRWEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSE 60 Query: 61 AGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLAPLWPIFLERHPE 120 AG +L+ C+++ A +EA + SA+P GLLR+ V +G + PL F+ +P+ Sbjct: 61 AGQTFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQ 120 Query: 121 VELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICASPGYLEQHGTPRH 180 + +DI LS+R +D++ EG+DLAIR+ RL+DS L+ +L + +CA+P YL +HGTP+ Sbjct: 121 LRVDIELSNRQLDLLHEGFDLAIRLGRLSDSRLVATRLAPRVMYLCATPEYLRRHGTPQS 180 Query: 181 PHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQP 240 P EL Q + S D W F RV N+G + + AAL G G+ + P Sbjct: 181 PAELGQFNCLIGS----SDLWSFLEDGRETQHRVQGNWRCNSGQAVLDAALRGFGLCQLP 236 Query: 241 TFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFLSEAFAQVH 296 + + ++LRSG+L LL + P+ ++A+YP + HL KVR ++D+L E AQ H Sbjct: 237 DYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKEGLAQSH 292 >SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 298 Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 180/299 (60%), Gaps = 5/299 (1%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 + L ++E F V GS A ALG S A +S+ + LE RLG+RL+QRTTR++SLTE Sbjct: 1 MTNLGDLEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTE 60 Query: 61 AGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLAPLWPIFLERHPE 120 AG + +R I+A LEEA+ S++ G LRI+AP +FG +H+AP F++ HP+ Sbjct: 61 AGQGFYDRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPD 120 Query: 121 VELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICASPGYLEQHGTPRH 180 ++L I L+D DI+ EG+DLAIRI L+DS+L+ RKL +CA+P Y+ +HG P Sbjct: 121 LKLHIVLTDDFTDIVAEGFDLAIRIGELSDSSLVARKLAPVRRLLCAAPSYVARHGAPTE 180 Query: 181 PHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQP 240 ELA+H + H D W+ GP+G +S R + N+ + +A + G GI + Sbjct: 181 IGELAKHICLP---AHNNDNWKLEGPDGSLSYRPEGPLVTNSSEIIREAVIAGAGIALRS 237 Query: 241 TFMIDQYLRSGQLVPLLTDYTVP-DLGIYAVYPSRAHLPAKVRAMLDFLSEAFAQV-HW 297 T+ I + LR G+LV +L + L + AVYPSR LPAKVR +D+L+ + V +W Sbjct: 238 TWDIGRELREGRLVQVLPQWEGSHKLTLSAVYPSRQFLPAKVRQFIDYLAALYGPVPYW 296 >mlr7786 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 306 Score = 219 bits (559), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 172/292 (58%), Gaps = 1/292 (0%) Query: 7 IECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGSLYL 66 + F VA+ SF AA LG+S A VSR V LE RLG+RL RT+RRL+LT+ G Sbjct: 10 LAMFAKVAEERSFAAAARVLGLSVATVSRGVSRLEERLGARLFNRTSRRLALTDFGHRLA 69 Query: 67 ERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLAPLWPIFLERHPEVELDIT 126 ER ++ E+A++ SA P GL+R+ P++FG+ +APL P F + +P+V +D+ Sbjct: 70 ERASRLYRDAEDAENAARELSASPRGLVRLAVPMSFGLRWVAPLLPDFFKLYPDVSIDMH 129 Query: 127 LSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICASPGYLEQHGTPRHPHELAQ 186 LSD +VD+I EG+D A+RIA L DS+L+ R+L S + I A+P YL +HG P P +L Sbjct: 130 LSDAVVDLIGEGFDAALRIAVLPDSSLVARRLCSIAPFIVAAPSYLARHGRPSTPRDLDA 189 Query: 187 HQIISYSYNHGKDEWQFSGPEGPVSVRV-NARMHVNNGDSCVQAALGGIGITRQPTFMID 245 H + Y+Y +D W FS G V + + V N D+ V L GI I P F+ Sbjct: 190 HHCLGYAYRPRQDVWHFSNAAGDEEVVTPSGPLRVTNSDALVPTVLAGIAIAELPEFIAS 249 Query: 246 QYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFLSEAFAQVHW 297 +YL G+L +LTD+T+P +Y V PS PAKV A+ F++ ++ W Sbjct: 250 EYLADGRLQAILTDWTLPRGALYFVTPSARARPAKVEAVAGFMAAHLSRPSW 301 >RSp1146 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 298 Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/293 (40%), Positives = 174/293 (59%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 +++L + F+ +LGSF AA+ L +S V + V +E RLG RL+ RTTRR SLT+ Sbjct: 1 MDRLTSMAVFVKAVELGSFSAAAEVLQMSSQLVGKHVQGIEQRLGVRLLNRTTRRQSLTD 60 Query: 61 AGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLAPLWPIFLERHPE 120 G + ER K I+A +E A+ L A P G LRINAPV+FG+ LA P +++R+PE Sbjct: 61 FGRAFYERSKIILAEVEIAESLAEETRAVPTGKLRINAPVSFGMHTLAQRLPEYMKRYPE 120 Query: 121 VELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICASPGYLEQHGTPRH 180 VE+++TLS+R VD+I+EGYD R+ L+DS LI R L L +CA+P YLE Sbjct: 121 VEVEMTLSNRTVDLINEGYDAVFRVGELSDSGLIARPLAPYRLVLCAAPAYLEGRPPLTT 180 Query: 181 PHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQP 240 P +L QH + ++Y + W F GP+G V V V++R+ V++G+ + AAL G+G+ QP Sbjct: 181 PWDLRQHNCLGFAYTELRTNWTFDGPDGRVVVPVSSRLMVDHGEPLLCAALAGMGVLLQP 240 Query: 241 TFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFLSEAFA 293 ++ L G LV +L Y ++ +Y + K+R+ LDF AF Sbjct: 241 LELVRSALADGSLVGVLPQYEPLTRPMHVLYAPDRRVTPKLRSFLDFAVLAFG 293