BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0016.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2740 [S] COG1981 Predicted membrane protein Rso Ralstonia sol...   186   1e-47
PA0661 [S] COG1981 Predicted membrane protein Pae Pseudomonas ae...   137   5e-33
NMB0310 [S] COG1981 Predicted membrane protein Nme Neisseria men...   121   5e-28
NMA2177 [S] COG1981 Predicted membrane protein NmA Neisseria men...   120   6e-28
HP1484 [S] COG1981 Predicted membrane protein Hpy Helicobacter p...    95   4e-20

>RSc2740 [S] COG1981 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 140

 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 113/141 (80%), Gaps = 1/141 (0%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLW+KA HIVF+ASWFAGLFYLPRIFVNLA ET   A  RLL MAR+L+RFT ++++VA+
Sbjct: 1   MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAI 60

Query: 61  VLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120
           VLG+WL  + +     P NGW+HAKL LV++ IGY H CG LL+KFE G N RSH +YRW
Sbjct: 61  VLGLWLF-LGYRIGLVPPNGWMHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRW 119

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNE+PVLL+LAI ILVVVKPF
Sbjct: 120 FNELPVLLLLAITILVVVKPF 140


>PA0661 [S] COG1981 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 140

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 105/144 (72%), Gaps = 10/144 (6%)

Query: 2   LWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVA-L 60
           +W+KA HI+ +  WFAGLFYLPR+FV  A   D  +RER   M R+LYR   M S++A L
Sbjct: 3   MWLKAFHIIAVVCWFAGLFYLPRLFVYHAMSEDQTSRERFCVMERKLYRGIMMPSMLATL 62

Query: 61  VLGVWLLAITWSFWKGPG---NGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVW 117
           VLG+W+L +T      PG    GWLHAKL LVVL+IGY HACG++LK+F  G+  RSHV+
Sbjct: 63  VLGLWMLYLT------PGWLSQGWLHAKLTLVVLLIGYHHACGAMLKRFARGEPGRSHVF 116

Query: 118 YRWFNEVPVLLMLAIVILVVVKPF 141
           YRWFNEVPVL +L IV+LVV+KPF
Sbjct: 117 YRWFNEVPVLFLLLIVLLVVLKPF 140


>NMB0310 [S] COG1981 Predicted membrane protein Nme Neisseria meningitidis
           MC58
          Length = 142

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 91/143 (63%), Gaps = 9/143 (6%)

Query: 3   WIKALHIVFIASWFAGLFYLPRIFVNLAQ-ETDLVARE--RLLGMARRLYRFTGMISLVA 59
           W K  H+ F+ SWFAGLFYLPRIFVN+A  +      E  RL GMA RLYRF   +   A
Sbjct: 5   WFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYVRLSGMAVRLYRFMSPLGFGA 64

Query: 60  LVLGVWL-LAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWY 118
           +V G  +  A  W  W   G+GW+H KL L ++++ YQ  CG LL++F+   N  SH WY
Sbjct: 65  VVFGAAIPFAAGW--W---GSGWVHVKLCLGLMLLAYQLYCGVLLRRFQDYSNAFSHRWY 119

Query: 119 RWFNEVPVLLMLAIVILVVVKPF 141
           R FNE+PVLLM+A + LVV KPF
Sbjct: 120 RVFNEIPVLLMVAALYLVVFKPF 142


>NMA2177 [S] COG1981 Predicted membrane protein NmA Neisseria meningitidis
           Z2491
          Length = 145

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 91/143 (63%), Gaps = 9/143 (6%)

Query: 3   WIKALHIVFIASWFAGLFYLPRIFVNLAQ-ETDLVARE--RLLGMARRLYRFTGMISLVA 59
           W K  H+ F+ SWFAGLFYLPRIFVN+A  +      E  RL GMA RLYRF   +   A
Sbjct: 8   WFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYVRLSGMAVRLYRFMSPLGFGA 67

Query: 60  LVLGVWL-LAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWY 118
           +V G  +  A  W  W   G+GW+H KL L ++++ YQ  CG LL++F+   N  SH WY
Sbjct: 68  VVFGAAIPFAAGW--W---GSGWVHVKLCLGLMLLAYQLYCGVLLRRFQDYSNAFSHRWY 122

Query: 119 RWFNEVPVLLMLAIVILVVVKPF 141
           R FNE+PVLLM+A + LVV KPF
Sbjct: 123 RVFNEIPVLLMVAALYLVVFKPF 145


>HP1484 [S] COG1981 Predicted membrane protein Hpy Helicobacter pylori
           26695
          Length = 148

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 10/145 (6%)

Query: 2   LWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGM----ARRLYRFTGMISL 57
           LW+KA H++ + SW A LFYLPR+FV  A+      ++  +G+     ++LY F    ++
Sbjct: 9   LWVKAFHVIAVISWMAALFYLPRLFVYHAENAH---KKEFVGVVQIQEKKLYSFIASPAM 65

Query: 58  -VALVLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHV 116
              L+ G+ +L I  + +K    GWLHAKL LVVL++ Y   C   +++ E     R+  
Sbjct: 66  GFTLITGILMLLIEPTLFKS--GGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRRNAR 123

Query: 117 WYRWFNEVPVLLMLAIVILVVVKPF 141
           +YR FNE P +LM+ IVILVVVKPF
Sbjct: 124 FYRVFNEAPTILMILIVILVVVKPF 148