BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0002.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1965 [U] COG0848 Biopolymer transport protein Rso Ralstonia s...   139   3e-33
XF0011 [U] COG0848 Biopolymer transport protein Xfa Xylella fast...   135   3e-32
XF0012 [U] COG0848 Biopolymer transport protein Xfa Xylella fast...   112   2e-25
NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria m...   108   3e-24
NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria m...   108   3e-24

>RSc1965 [U] COG0848 Biopolymer transport protein Rso Ralstonia solanacearum
          Length = 137

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 103/136 (75%), Gaps = 2/136 (1%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSNPAPEK 60
           M+FG F DN +   M++IN+TP+VDVMLVLL+IFIIT P+  HA+K+DLP A + P   K
Sbjct: 1   MAFGTF-DNDDEV-MSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAK 58

Query: 61  PETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMS 120
           P+++ + IDA G +YWN+QPV +  ++A +  AA ++PQPE+ LRAD+S RYE +A+VM+
Sbjct: 59  PQSVNVEIDAKGLVYWNNQPVDDATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMA 118

Query: 121 AAQGAGLTKLGFVTDP 136
           A Q  GL ++GFVT+P
Sbjct: 119 AIQRGGLARIGFVTEP 134


>XF0011 [U] COG0848 Biopolymer transport protein Xfa Xylella fastidiosa
           9a5c
          Length = 140

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 91/132 (68%), Gaps = 3/132 (2%)

Query: 5   GFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTA---QSNPAPEKP 61
            F++  ++ PMADINVTP+VDVMLVLL+IFIITAP+ +H +K++LP A   + N   ++ 
Sbjct: 2   AFSNGNSNGPMADINVTPLVDVMLVLLIIFIITAPLMSHKIKVELPQANLVKKNNEEKRS 61

Query: 62  ETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMSA 121
             ITL +   G LYWND  +SE +++ R + AA + PQP L LR D++T+   I++++  
Sbjct: 62  NPITLAVKEDGSLYWNDAQISENELEQRFSVAAQQTPQPPLNLRGDRTTKMSKISKIIKV 121

Query: 122 AQGAGLTKLGFV 133
           AQG G+  +GF+
Sbjct: 122 AQGQGIMDIGFI 133


>XF0012 [U] COG0848 Biopolymer transport protein Xfa Xylella fastidiosa
           9a5c
          Length = 136

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 86/133 (64%), Gaps = 5/133 (3%)

Query: 5   GFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSN---PAPEKP 61
            F+   N  PMADINVTP+VDVMLVLL+IFI+TAP+ T+ + +DLP    N      E P
Sbjct: 2   AFSSGSNRGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQPVLNPPPMDHEPP 61

Query: 62  ETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKP--QPELQLRADKSTRYEMIAEVM 119
             I L IDA+ ++YWN+  V+   +  R+     K P  QP+LQ+ A+  + YE+IA+V+
Sbjct: 62  PPIQLKIDASNQVYWNNTLVAVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKVL 121

Query: 120 SAAQGAGLTKLGF 132
           +AA+ A + K+GF
Sbjct: 122 AAAKNADMKKIGF 134


>NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria meningitidis
           MC58
          Length = 144

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 93/143 (65%), Gaps = 7/143 (4%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTA--QSNPAP 58
           M+FG  N   +S PM+DINVTP+VDVMLVLL++F+IT P+ TH++ L+LPTA  Q+N   
Sbjct: 1   MAFGSMNSGDDS-PMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQD 59

Query: 59  EKPET-ITLGIDAAGKLYWNDQPVSEEDM---DARLATAAAKKPQPELQLRADKSTRYEM 114
           ++P+  + L IDA G  Y      S+ ++   ++RL  A  +     + + ADK+  Y+ 
Sbjct: 60  KQPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDY 119

Query: 115 IAEVMSAAQGAGLTKLGFVTDPK 137
           + + + AA+ AG+TK+GFVT+ K
Sbjct: 120 VNKALEAARQAGITKIGFVTETK 142


>NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria meningitidis
           Z2491
          Length = 144

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 93/143 (65%), Gaps = 7/143 (4%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTA--QSNPAP 58
           M+FG  N   +S PM+DINVTP+VDVMLVLL++F+IT P+ TH++ L+LPTA  Q+N   
Sbjct: 1   MAFGSMNSGDDS-PMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQD 59

Query: 59  EKPET-ITLGIDAAGKLYWNDQPVSEEDM---DARLATAAAKKPQPELQLRADKSTRYEM 114
           ++P+  + L IDA G  Y      S+ ++   ++RL  A  +     + + ADK+  Y+ 
Sbjct: 60  KQPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDY 119

Query: 115 IAEVMSAAQGAGLTKLGFVTDPK 137
           + + + AA+ AG+TK+GFVT+ K
Sbjct: 120 VNKALEAARQAGITKIGFVTETK 142