BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0172.p (589 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1156 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 427 e-119 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 384 e-106 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 382 e-106 tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri... 372 e-102 ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 369 e-101 >RSc1156 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust. Identities = 295/607 (48%), Positives = 400/607 (65%), Gaps = 29/607 (4%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 60 ++N +VR L++ L F+ MIVVGAAVG+ AL AN +TE VH I+ +++NDAYKD Sbjct: 5 LKNTSVRAGLLAILVTFALMIVVGAAVGVLALSTANVSTERVHAISARSMLLNDAYKDMM 64 Query: 61 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 120 R R+ L R Y +E + AL SA++ ++ L +D F P + G + A+++ Sbjct: 65 RARTGLARVYGMLRENPGTPLASNALDSAESGVKKSLAQLDAFKSAPAIEGVDQALRQAA 124 Query: 121 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 180 ++A+A +D + +A + L+A D AY+ +N K + +G +S ++ FQK + +L A Sbjct: 125 AQAAQAHADAVQRAMAALRASDAAAYATINAKDVTSSGAAWSVEIERFQKLSSQLAQEEA 184 Query: 181 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 240 Y ++V V G++ A+ L+ VH+ L+ V+TPLN AV +L VA GDL+ +V Sbjct: 185 DGGQARYGLIVKFVSVGIVMALALIAAVHYALKAFVVTPLNDAVDVLTRVAEGDLSVQVR 244 Query: 241 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 300 NE+GRL SA+ M+ +LL TV +VRSSSD+++T A EIA+GN+DLSSRTEQQ++SL Sbjct: 245 EGGRNELGRLLSAVARMRASLLQTVRQVRSSSDAVNTGAHEIASGNLDLSSRTEQQSASL 304 Query: 301 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 360 E+TAASMEQ+T TV N++NA QA+ LA SA+ AS+GGEVV VV TM I+ SSRK+ Sbjct: 305 EKTAASMEQMTSTVTNNSENARQASALAASAADLASRGGEVVRGVVSTMDEISASSRKMA 364 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAKEIK LID Sbjct: 365 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKEIKDLID 424 Query: 421 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 ASV++V+AG+ LV QAG+TM E V +V+RV +IV +IA AS EQ+ GI Q+++A+++M++ Sbjct: 425 ASVDRVQAGNTLVAQAGSTMTETVDAVRRVANIVEDIAAASSEQTQGILQISQAVSEMEQ 484 Query: 481 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQ--VASPAAKP----------- 527 VTQQNAALVEQAAAAAQSL+ Q+ NL V+ F++D VA+ A+KP Sbjct: 485 VTQQNAALVEQAAAAAQSLEEQSLNLTHVVAQFRLDETDGVVAAAASKPVRTAPAAAVKP 544 Query: 528 -----RPATMAPPPAPAAPAAPALKTAPAAAAAPKAAPKLPPAKPAKASPPAPGSRIKDD 582 RP P+P A A + AAA A K A+P A + G Sbjct: 545 AAKPPRPVVRKRGPSPKAVAPATVPVVAPAAAPVVAPVK---AQPLAAVAGSDG------ 595 Query: 583 AQDWEEF 589 DWE F Sbjct: 596 --DWETF 600 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/549 (44%), Positives = 344/549 (62%), Gaps = 13/549 (2%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 60 M+N+ V +++ L +FS +++V + A+ + ++ + +++ Sbjct: 1 MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASALSYQQQELGGSFQTLI 60 Query: 61 RTRSALTR-AYANQKEKNDPAVTEAA---LKSAQASYERGLKFVDEFSKLPDLAGEEPAV 116 TR + R A K + DPA +A L +A AS K + + +AG++PA+ Sbjct: 61 ETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEKHFNNYVNSEAIAGKDPAL 120 Query: 117 KKELIESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELN 176 + S + + D+L ++ LKA + AY +L+ ++ A + D + + +L Sbjct: 121 DAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLDAQK---AQDDMEQVYDQWLSQNAQLI 177 Query: 177 DNAASERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLT 236 A+ + + + W + L+ + ++ + L+ ++L PL R + + +A+GDLT Sbjct: 178 KLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLLRPLQRIMAHIQTIADGDLT 237 Query: 237 TKVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQ 296 +++ +E+G+L + +++MQQ+L+ TVS VR ++DSI T A EI+AG+ DLSSRTEQQ Sbjct: 238 HEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQ 297 Query: 297 ASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESS 356 AS+LEETAASMEQLT TV+QN DNA QA LA +AS TA KGG VV VV TM I ESS Sbjct: 298 ASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDIAESS 357 Query: 357 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 416 KIVDI SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RSA AAKEIK Sbjct: 358 EKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIK 417 Query: 417 SLIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAIT 476 LI+ SV +++ GS V +AG TM E+V +V RVTDI+GEIA AS EQS GIEQV +A++ Sbjct: 418 VLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVS 477 Query: 477 QMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMAP-- 534 +MD VTQQNA+LVE++AAAA +L+ QA L AV+ F+I P + P T++ Sbjct: 478 EMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQKQ----PRREASPTTLSKGL 533 Query: 535 PPAPAAPAA 543 P PAA A Sbjct: 534 TPQPAAEQA 542 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/503 (47%), Positives = 320/503 (63%), Gaps = 9/503 (1%) Query: 52 INDAYKDTTRTRSALTRA----YANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLP 107 +N + + +TR+ L RA +Q A ++ A + + K +++ LP Sbjct: 53 LNATWVELLQTRNTLNRAGIRWMMDQSNIGSGATVAELMQGATNTLKLTEKNWEQYEALP 112 Query: 108 DLAGEEPAVKKELIESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDA 167 + A E+ + LA+ L AG + D + A F K A Sbjct: 113 RDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINEFFDQPTQSYQDA---FEKQYMA 169 Query: 168 FQKRAMELNDNAASERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLL 227 + ++ L D A + YN +W++++ LI + ++I V F ++ ++ P+NR + + Sbjct: 170 YMQQNDRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESI 229 Query: 228 DLVANGDLTTKVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNM 287 +A+GDL ++DV +NE+G+L +R MQ L+ TV VR+ +++I + A EIA GN Sbjct: 230 RHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNN 289 Query: 288 DLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVD 347 DLSSRTEQQA+SLEETAASMEQLT TVKQNA+NA QA+ LA SAS TA KGG+VV VV Sbjct: 290 DLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQ 349 Query: 348 TMQAINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 407 TM+ I SS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQR Sbjct: 350 TMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQR 409 Query: 408 SAAAAKEIKSLIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTG 467 SA AA+EIKSLI+ SV +V+ GS LVE AG TM E+V +V RVTDI+GEIA AS EQS G Sbjct: 410 SAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRG 469 Query: 468 IEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQ--VASPAA 525 I+QV A+ +MD VTQQNA+LVE++AAAA +L+ QA+ L AV++F+I Q AA Sbjct: 470 IDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRIHQQQQRAREVAA 529 Query: 526 KPRPATMAPPPAPAAPAAPALKT 548 PA ++ P A A + +T Sbjct: 530 VKTPAAVSSPKAAVADGSDNWET 552 >tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia coli K12 Length = 551 Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/548 (44%), Positives = 338/548 (61%), Gaps = 20/548 (3%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 60 ++ + + SL+ LA+F + + + AL + + I + +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRSALTRA----YANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAV 116 +TR+ L RA +Q + ++SA S ++ K ++ LP + A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMESASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KKELIESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGR---FSKALDAFQKRAM 173 E+ + + LA+ L AG + D P G F K A+ ++ Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKINEFFD------QPTQGYQDGFEKQYVAYMEQND 175 Query: 174 ELNDNAASERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANG 233 L+D A S+ Y+ +W+++ +I + ++ V F ++ ++ P+NR + + +A G Sbjct: 176 RLHDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGG 235 Query: 234 DLTTKVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRT 293 DL ++V +NE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DLSSRT Sbjct: 236 DLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRT 295 Query: 294 EQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAIN 353 EQQA+SLEETAASMEQLT TVKQNA+NA QA+ LA SAS TA +GG+VV VV TM+ I+ Sbjct: 296 EQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 355 Query: 354 ESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 413 SS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+ Sbjct: 356 TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAR 415 Query: 414 EIKSLIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNR 473 EIKSLI+ SV KV+ GS LVE AG TM E+V++V RVTDI+GEIA AS EQS GI+QV Sbjct: 416 EIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGL 475 Query: 474 AITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMA 533 A+ +MD VTQQNAALVE++AAAA +L+ QA+ L AV++F+I Q + A + Sbjct: 476 AVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQRETSA-------VV 528 Query: 534 PPPAPAAP 541 PAAP Sbjct: 529 KTVTPAAP 536 >ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 554 Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/522 (45%), Positives = 329/522 (63%), Gaps = 13/522 (2%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 60 ++ + + SL+ LA+F + + + AL + + I + +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRSALTRA----YANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAV 116 +TR+ L RA +Q + ++SA S ++ K ++ LP + A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KKELIESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGR---FSKALDAFQKRAM 173 E+ + + LA+ L AG + D P G F K A+ ++ Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKINEFFD------QPTQGYQDGFEKQYVAYMEQND 175 Query: 174 ELNDNAASERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANG 233 L D A S+ Y+ +W+++ +I + ++ V F ++ ++ P+NR + + +A G Sbjct: 176 RLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGG 235 Query: 234 DLTTKVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRT 293 DL ++V +NE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DLSSRT Sbjct: 236 DLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRT 295 Query: 294 EQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAIN 353 EQQA+SLEETAASMEQLT TVKQNA+NA QA+ LA SAS TA +GG+VV VV TM+ I+ Sbjct: 296 EQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 355 Query: 354 ESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 413 SS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+ Sbjct: 356 TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAR 415 Query: 414 EIKSLIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNR 473 EIKSLI+ SV KV+ GS LVE AG TM E+V++V RVTDI+GEIA AS EQS GI+QV Sbjct: 416 EIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGL 475 Query: 474 AITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKI 515 A+ +MD VTQQNAALVE++AAAA +L+ QA+ L AV++F+I Sbjct: 476 AVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRI 517