BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0165.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1023 [O] COG1076 DnaJ-domain-containing proteins 1 Rso Ralsto...   173   1e-43
NMB1383 [O] COG1076 DnaJ-domain-containing proteins 1 Nme Neisse...   136   2e-32
NMA1598 [O] COG1076 DnaJ-domain-containing proteins 1 NmA Neisse...   134   9e-32
VC0751 [O] COG1076 DnaJ-domain-containing proteins 1 Vch Vibrio ...   117   1e-26
hscB [O] COG1076 DnaJ-domain-containing proteins 1 Eco Escherich...   114   1e-25

>RSc1023 [O] COG1076 DnaJ-domain-containing proteins 1 Rso Ralstonia
           solanacearum
          Length = 176

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 119/165 (72%), Gaps = 1/165 (0%)

Query: 3   NHFDLFQLPQRFAIDQKALEQAFHSVQGQAHPDKFAHASDAEKRVAMQWATRANEAYQTL 62
            HF LF LP+ F +D  AL  A+ +VQ +AHPD+ AHASDAE+RVAMQWATRANEAYQTL
Sbjct: 7   THFSLFGLPEHFEVDDGALNAAYRTVQSRAHPDRHAHASDAERRVAMQWATRANEAYQTL 66

Query: 63  KNPLKRARYLCELHGVDLQTESNTAMAPGFLMQQMEWRETLDDAKAGKDIDALEQLNTEL 122
           ++PLKRA YL  L GVD+Q E+NTAM P FLMQQ+EWRE+L DAKA  D+DAL+ L   L
Sbjct: 67  RDPLKRATYLLHLRGVDVQAENNTAMPPAFLMQQLEWRESLADAKAAGDLDALDDLLAML 126

Query: 123 LTEKKAEIARIEALLDAGDY-AAAGTLVRQLMFLDKFGAEIGDAF 166
             EK+A    +  LL+ G + AAA   VRQLMF++K   +  +A 
Sbjct: 127 RGEKRARYQTLAGLLNGGGHDAAAADAVRQLMFIEKIERDTAEAI 171


>NMB1383 [O] COG1076 DnaJ-domain-containing proteins 1 Nme Neisseria
           meningitidis MC58
          Length = 166

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 102/165 (61%)

Query: 1   MQNHFDLFQLPQRFAIDQKALEQAFHSVQGQAHPDKFAHASDAEKRVAMQWATRANEAYQ 60
           M  +F LF++   F ID + LEQ + ++  + HPDKFA AS  E++ A+  ++  N+AY+
Sbjct: 1   MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFEQKQAVMMSSTINDAYR 60

Query: 61  TLKNPLKRARYLCELHGVDLQTESNTAMAPGFLMQQMEWRETLDDAKAGKDIDALEQLNT 120
           TLKNP+ RA YL +  G+D     +TA AP FLMQQMEWRETL +A+AG D+++L+ L+ 
Sbjct: 61  TLKNPIDRAAYLLKTSGIDADAPEHTAFAPEFLMQQMEWRETLMEARAGNDLESLKNLDN 120

Query: 121 ELLTEKKAEIARIEALLDAGDYAAAGTLVRQLMFLDKFGAEIGDA 165
           E+  E++     ++      DY  A   VRQ  FLDK   EI  A
Sbjct: 121 EIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRNEISSA 165


>NMA1598 [O] COG1076 DnaJ-domain-containing proteins 1 NmA Neisseria
           meningitidis Z2491
          Length = 166

 Score =  134 bits (337), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 102/165 (61%)

Query: 1   MQNHFDLFQLPQRFAIDQKALEQAFHSVQGQAHPDKFAHASDAEKRVAMQWATRANEAYQ 60
           M  +F LF++   F ID + LEQ + ++  + HPDKFA AS  E++ A+  ++  N+AY+
Sbjct: 1   MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFEQKQAVMMSSTINDAYR 60

Query: 61  TLKNPLKRARYLCELHGVDLQTESNTAMAPGFLMQQMEWRETLDDAKAGKDIDALEQLNT 120
           TLKNP+ RA YL +  G+D     +T+ A  FLMQQMEWRETL +A+AGKD+++L+ L+ 
Sbjct: 61  TLKNPIDRAAYLLKTSGIDADAPEHTSFASEFLMQQMEWRETLMEARAGKDLESLKNLDN 120

Query: 121 ELLTEKKAEIARIEALLDAGDYAAAGTLVRQLMFLDKFGAEIGDA 165
           E+  E++     ++      DY  A   VRQ  FLDK   EI  A
Sbjct: 121 EIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRNEISSA 165


>VC0751 [O] COG1076 DnaJ-domain-containing proteins 1 Vch Vibrio cholerae
          Length = 171

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 3   NHFDLFQLPQRFAIDQKALEQAFHSVQGQAHPDKFAHASDAEKRVAMQWATRANEAYQTL 62
           N+F+LF LP +F +D   L   F ++Q + HPD FA AS+ ++ +A+Q A + N+AYQTL
Sbjct: 2   NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 61

Query: 63  KNPLKRARYLCELHGVDLQTESNTAMAPGFLMQQMEWRETLDDAKAGKDID-ALEQLNTE 121
           K+PL+RA YL  L G+++  E  T   P FLM+QME RE L+   A  D + AL   +T+
Sbjct: 62  KDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDTK 121

Query: 122 LLTEKKAEIARIEALLDAGDYAAAGTLVRQLMFLDKFGAEI 162
           +   ++  +A+++  L   ++ AA   +R+L F+ K   E+
Sbjct: 122 VTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEV 162


>hscB [O] COG1076 DnaJ-domain-containing proteins 1 Eco Escherichia coli
           K12
          Length = 171

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 3   NHFDLFQLPQRFAIDQKALEQAFHSVQGQAHPDKFAHASDAEKRVAMQWATRANEAYQTL 62
           ++F LF LP R+ +D +AL   F  +Q Q HPDKFA  S AE+  A+Q +   N+A+QTL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 63  KNPLKRARYLCELHGVDLQTESNTAMAPGFLMQQMEWRETLDDAKAGKDIDALEQLNTEL 122
           ++PL RA YL  LHG DL +E +T     FLM+Q+E RE LD+ +  KD   LE     +
Sbjct: 62  RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRV 121

Query: 123 LTEKKAEIARIEAL---LDAGDYAAAGTLVRQLMFLDKFGA 160
              KK    R + +   LD   + AA   VR+L FLDK  +
Sbjct: 122 ---KKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRS 159