BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0149.p         (62 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1261 [T] COG2204 Response regulator containing CheY-like rece...    71   7e-13
PA5125 [T] COG2204 Response regulator containing CheY-like recei...    60   9e-10

>RSc1261 [T] COG2204 Response regulator containing CheY-like receiver,
           AAA-type ATPase, and DNA-binding domains Rso Ralstonia
           solanacearum
          Length = 502

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 1   MLASEQPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGIGRNTITRKIQELGI 56
           ML + QP+VMD L R+FE A+++ AL  T GR+ +AA RLGIGRNTITRK+QELG 
Sbjct: 446 MLEAGQPDVMDALTRRFERAILEAALGVTRGRRVEAATRLGIGRNTITRKLQELGF 501


>PA5125 [T] COG2204 Response regulator containing CheY-like receiver,
           AAA-type ATPase, and DNA-binding domains Pae Pseudomonas
           aeruginosa
          Length = 476

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 6   QPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGIGRNTITRKIQELG--IGGAEDD 62
           Q  ++D     FE  +I+ ALKHT GR+ DAAV LG GRNT+TRKI+ELG  + GA+D+
Sbjct: 415 QSNLLDSAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMNVDGADDE 473