BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0145.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0367 [KT] COG1221 Transcriptional regulators containing an AA...    96   2e-20
prpR [KT] COG1221 Transcriptional regulators containing an AAA-t...    94   1e-19
ZprpR [KT] COG1221 Transcriptional regulators containing an AAA-...    94   1e-19
ECs0384 [KT] COG1221 Transcriptional regulators containing an AA...    94   1e-19
RSp0123 Non COG                                                        58   6e-09

>STM0367 [KT] COG1221 Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain Sty Salmonella
           typhimurium LT2
          Length = 541

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 60/77 (77%)

Query: 1   VVARASGFDVMQALARARQISPRIGLVTYQEAMPALTEFQQMFGLDIAQRTYATEEDARA 60
           ++ + SGFDV+QALA+A +++  IG+VTYQE +PAL  FQ+ F L + QR+Y TEEDAR 
Sbjct: 87  ILIKPSGFDVLQALAKAGKLTSSIGIVTYQETIPALLAFQKTFHLRLEQRSYVTEEDARG 146

Query: 61  VVQELKAGGVQAVVGAG 77
            + ELKA G++AVVGAG
Sbjct: 147 QINELKANGIEAVVGAG 163


>prpR [KT] COG1221 Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain Eco Escherichia
           coli K12
          Length = 528

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 59/77 (76%)

Query: 1   VVARASGFDVMQALARARQISPRIGLVTYQEAMPALTEFQQMFGLDIAQRTYATEEDARA 60
           ++ + SG+DV+QALA+A +++  IG+VTYQE +PAL  FQ+ F L + QR+Y TEEDAR 
Sbjct: 84  ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143

Query: 61  VVQELKAGGVQAVVGAG 77
            + ELKA G +AVVGAG
Sbjct: 144 QINELKANGTEAVVGAG 160


>ZprpR [KT] COG1221 Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain EcZ Escherichia
           coli O157:H7 EDL933
          Length = 528

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 59/77 (76%)

Query: 1   VVARASGFDVMQALARARQISPRIGLVTYQEAMPALTEFQQMFGLDIAQRTYATEEDARA 60
           ++ + SG+DV+QALA+A +++  IG+VTYQE +PAL  FQ+ F L + QR+Y TEEDAR 
Sbjct: 84  ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143

Query: 61  VVQELKAGGVQAVVGAG 77
            + ELKA G +AVVGAG
Sbjct: 144 QINELKANGTEAVVGAG 160


>ECs0384 [KT] COG1221 Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain Ecs Escherichia
           coli O157:H7
          Length = 528

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 59/77 (76%)

Query: 1   VVARASGFDVMQALARARQISPRIGLVTYQEAMPALTEFQQMFGLDIAQRTYATEEDARA 60
           ++ + SG+DV+QALA+A +++  IG+VTYQE +PAL  FQ+ F L + QR+Y TEEDAR 
Sbjct: 84  ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143

Query: 61  VVQELKAGGVQAVVGAG 77
            + ELKA G +AVVGAG
Sbjct: 144 QINELKANGTEAVVGAG 160


>RSp0123 Non COG
          Length = 649

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query: 1   VVARASGFDVMQALARARQISPRIGLVTYQEAMPALTEFQQMFGLDIAQRTYATEEDARA 60
           VV   +GFDVM ALARAR+ +  + LVT+ +    +  F   +G+D+    Y + +DA +
Sbjct: 82  VVINPTGFDVMHALARARREAESVALVTHGDTPDEVRRFVAAYGMDVVFAAYQSRQDAES 141

Query: 61  VVQELKAGGVQAVVGAG 77
            V +L+  GV AVVG G
Sbjct: 142 CVLDLRDRGVGAVVGPG 158