BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0138.p         (249 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1286 [M] COG3713 Outer membrane protein V Sty Salmonella typh...    74   4e-13
ZyeaF [M] COG3713 Outer membrane protein V EcZ Escherichia coli ...    68   2e-11
ECs2491 [M] COG3713 Outer membrane protein V Ecs Escherichia col...    68   2e-11
yeaF [M] COG3713 Outer membrane protein V Eco Escherichia coli K12     67   3e-11
YPO2155 [M] COG3713 Outer membrane protein V Ype Yersinia pestis       65   2e-10

>STM1286 [M] COG3713 Outer membrane protein V Sty Salmonella typhimurium LT2
          Length = 248

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 101 RGLQRRSDPIPLGIGTYQETPIGGFFLNVFRD-FNKSHGTLAEAIYAAQIDLGPVTLYPQ 159
           R L RR   +  G+     T  G    ++  D  + S+G + +  +  +   G +TL P 
Sbjct: 100 RRLDRRKSTMMAGVSYAHHTQYGFLRTSLAGDTLDNSNGIVWDLAWLYRYTNGGLTLTPG 159

Query: 160 LGVEYRSGSYNDYFVGVTSSEAAASGLRQYSAGASTSPTLGLAADVPLTGDWHLNLHLRR 219
           +GVE+ S + NDY+ GV+  E++ SGLR Y+   S +P L L+A+    G+W +    R 
Sbjct: 160 IGVEWNSENQNDYYYGVSRKESSRSGLRGYNPNDSWNPYLELSANYNFAGNWSVYGTARY 219

Query: 220 KWLDNAVADSPLVRRHTDDTAIVAVSYRF 248
             L + + DSP+V +         V+YRF
Sbjct: 220 TRLSDEITDSPMVDKSWTGILSTGVTYRF 248


>ZyeaF [M] COG3713 Outer membrane protein V EcZ Escherichia coli O157:H7
           EDL933
          Length = 248

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%)

Query: 133 FNKSHGTLAEAIYAAQIDLGPVTLYPQLGVEYRSGSYNDYFVGVTSSEAAASGLRQYSAG 192
            + S+G + +  +  +   G +T+ P +GV++ S + N+Y+ GV+  E+A SGLR Y++ 
Sbjct: 133 LDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNSN 192

Query: 193 ASTSPTLGLAADVPLTGDWHLNLHLRRKWLDNAVADSPLVRRHTDDTAIVAVSYRF 248
            S SP L L+A     GDW +    R   L + V DSP+V +         ++Y+F
Sbjct: 193 DSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPIVDKSWTGLISTGITYKF 248


>ECs2491 [M] COG3713 Outer membrane protein V Ecs Escherichia coli O157:H7
          Length = 248

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%)

Query: 133 FNKSHGTLAEAIYAAQIDLGPVTLYPQLGVEYRSGSYNDYFVGVTSSEAAASGLRQYSAG 192
            + S+G + +  +  +   G +T+ P +GV++ S + N+Y+ GV+  E+A SGLR Y++ 
Sbjct: 133 LDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNSN 192

Query: 193 ASTSPTLGLAADVPLTGDWHLNLHLRRKWLDNAVADSPLVRRHTDDTAIVAVSYRF 248
            S SP L L+A     GDW +    R   L + V DSP+V +         ++Y+F
Sbjct: 193 DSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPIVDKSWTGLISTGITYKF 248


>yeaF [M] COG3713 Outer membrane protein V Eco Escherichia coli K12
          Length = 248

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%)

Query: 133 FNKSHGTLAEAIYAAQIDLGPVTLYPQLGVEYRSGSYNDYFVGVTSSEAAASGLRQYSAG 192
            + S+G + +  +  +   G +T+ P +GV++ S + N+Y+ GV+  E+A SGLR Y+  
Sbjct: 133 LDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNPN 192

Query: 193 ASTSPTLGLAADVPLTGDWHLNLHLRRKWLDNAVADSPLVRRHTDDTAIVAVSYRF 248
            S SP L L+A     GDW +    R   L + V DSP+V +         ++Y+F
Sbjct: 193 DSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPMVDKSWTGLISTGITYKF 248


>YPO2155 [M] COG3713 Outer membrane protein V Ype Yersinia pestis
          Length = 256

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 19/195 (9%)

Query: 72  DTFGVKTVRMGYGYL--ELAGRVSLDGF------------DAQ-RGLQRRSDPIPLGIGT 116
           D F  +T+  GY YL  + + R+S+D F            D Q + L RR   +  G+ +
Sbjct: 64  DNFYFRTLAAGY-YLWNDSSNRLSIDAFYSPLHFKPGDSDDQQMKQLNRRRSTMMAGM-S 121

Query: 117 YQETPIGGFFLNVFRD--FNKSHGTLAEAIYAAQIDLGPVTLYPQLGVEYRSGSYNDYFV 174
           Y      G    +F     + S G + +  Y  +  +   TL P +GV + S   N Y+ 
Sbjct: 122 YSHIEDWGTLRAMFAGDILDNSDGFVGDLAYLYRFSIDSWTLTPGVGVSWSSKDQNSYYY 181

Query: 175 GVTSSEAAASGLRQYSAGASTSPTLGLAADVPLTGDWHLNLHLRRKWLDNAVADSPLVRR 234
           GV+  E+A SGL +Y+   S SP L L+A+  +  +W+     R   L N V +SP+V +
Sbjct: 182 GVSRGESARSGLAEYNPSDSWSPYLELSANYNINPNWNAFFTGRYIRLANEVKNSPMVDQ 241

Query: 235 HTDDTAIVAVSYRFK 249
                    V+Y F+
Sbjct: 242 SYTGVLWTGVTYTFR 256