BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0107.p (187 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1120 [G] COG1653 ABC-type sugar transport system, periplasmic ... 110 2e-24 RSc1264 [G] COG1653 ABC-type sugar transport system, periplasmic... 92 6e-19 STM3557 [G] COG1653 ABC-type sugar transport system, periplasmic... 92 8e-19 CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic... 91 2e-18 YPO3796 [G] COG1653 ABC-type sugar transport system, periplasmic... 89 4e-18 >TM1120 [G] COG1653 ABC-type sugar transport system, periplasmic component Tma Thermotoga maritima Length = 436 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 3/159 (1%) Query: 28 VEISFYYPVAVGGAVTKTIDSMVADFEKANPDIKVKAIYAGTYQESIVKALTAFKGGTPP 87 V+I F++ A+GG + + +M DF K +PDI+V+ Y G+Y++++ K + A +GGTPP Sbjct: 20 VKIQFWH--AMGGWRIELLQNMAEDFMKTHPDIEVEVQYTGSYRDTLNKLVAAVQGGTPP 77 Query: 88 TLAVLLSTDLFTLIDENAIVPIDSLASSAEDKRWIDGFYKGFMENSQTEGKTWGIPFQRS 147 + + +ID VPI L + F ++ + +GK + +PF S Sbjct: 78 HVVQIYEIGTQFMIDSGIAVPIGDLIEKDPSFD-VGKFLPQVLDYYRVKGKLYSMPFNSS 136 Query: 148 TIVMYYNKNLFKEAGLNPDKAPANWNEMVEAAKKLTKRD 186 ++YYNK LFKE GL+P+K P +NE++E KKLT +D Sbjct: 137 NPILYYNKTLFKEVGLDPNKPPRTFNELIEYCKKLTVKD 175 >RSc1264 [G] COG1653 ABC-type sugar transport system, periplasmic component Rso Ralstonia solanacearum Length = 438 Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 18/185 (9%) Query: 7 KSLAALAVSAAFCAPVLAANPV-EISFYYPVAVGGAVTKTIDSMVADFEKANPDIKVKAI 65 K A+AV AA C AA+ V EI +++ ++ GA+ ++ + F + PD KV + Sbjct: 5 KIAGAVAVLAA-CTFAQAAHAVTEIQWWH--SMEGALNDKVNELANKFNASQPDYKVVPV 61 Query: 66 YAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLID-ENAIVPIDSLASSAEDK----- 119 Y G Y ES+ + AF+ G P + + T+++ AIVPI + A +K Sbjct: 62 YKGQYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNARGAIVPIAKVMKDAGEKFDPKA 121 Query: 120 --RWIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVE 177 + G+Y + +G PF ST ++YYNK+ FK+AGL+P+K PA W E+ Sbjct: 122 YVPAVAGYY------TSNKGDMLSFPFNSSTTILYYNKDAFKKAGLDPNKPPATWQEVAI 175 Query: 178 AAKKL 182 A KL Sbjct: 176 DAAKL 180 >STM3557 [G] COG1653 ABC-type sugar transport system, periplasmic component Sty Salmonella typhimurium LT2 Length = 438 Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 12/185 (6%) Query: 1 MRRTFLKSLAALAVSAAFCAPVLAANPVEISFYYPVAVGGAVTKTIDSMVADFEKANPDI 60 +R T L LA+S AF LA I F++ ++ G + K +DS+ F +ANPD Sbjct: 4 LRHTAL----GLALSLAFTGQALAV--TTIPFWH--SMEGELGKEVDSLAQRFNQANPDY 55 Query: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAE--- 117 K+ +Y G Y++++ + AF+ G P + + T++ AI P+ + A Sbjct: 56 KIVPVYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYEVFKDAGINF 115 Query: 118 DKRWIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVE 177 D+ G+ ++++ G PF ST V+YYNK+ FK+AGL+P++ P W E+ + Sbjct: 116 DESQFVPTVAGYYTDAKS-GHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQELAD 174 Query: 178 AAKKL 182 KL Sbjct: 175 YTAKL 179 >CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic component Cac Clostridium acetobutylicum Length = 447 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 11/193 (5%) Query: 1 MRRTFLKSLAALAVSAAF---CAPVLAA----NPVEISFYYPVAVGGAVTKTIDSMVADF 53 M+R + L A+SA CA A+ V+I+F++ A+ G + ++ MV DF Sbjct: 1 MKRKIISLLLIGALSATILSGCAQSKASASESKTVQITFWH--AMSGKNGEALNKMVEDF 58 Query: 54 EKANPDIKVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLA 113 ++ DIKVKA + G Y E + K +A KGG P + + +ID PI + Sbjct: 59 NNSHSDIKVKAEFQGKYDEELNKLKSAEKGGEAPDIVQVYDIGTRFMIDSKWAEPIQNFI 118 Query: 114 SSAEDKRWIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWN 173 +DK + K + +PF ST ++YYNK+ FKEA L+P+K P ++ Sbjct: 119 D--KDKYDTSSLEPNLLAYYTVNNKLYSMPFNSSTPILYYNKSAFKEADLDPNKPPKTFS 176 Query: 174 EMVEAAKKLTKRD 186 E+ +K L K+D Sbjct: 177 ELERYSKALAKKD 189 >YPO3796 [G] COG1653 ABC-type sugar transport system, periplasmic component Ype Yersinia pestis Length = 439 Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 8/175 (4%) Query: 11 ALAVSAAFCAPVLAANPVEISFYYPVAVGGAVTKTIDSMVADFEKANPDIKVKAIYAGTY 70 +A++ F A +A EI F++ ++ G + K +DS+ F ++ PD K+ +Y G Y Sbjct: 12 CIALTLTFSANAMAV--TEIPFWH--SMEGELGKEVDSIADRFNQSQPDYKIVPVYKGNY 67 Query: 71 QESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAE---DKRWIDGFYK 127 ++S+ + AF+ G P + + T++ AI P+ + A D+ Sbjct: 68 EQSLAAGIAAFRSGKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDESVFVPTVA 127 Query: 128 GFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVEAAKKL 182 G+ +S+T G+ PF ST V+YYNK FK+AGL+P++ P W E+ KL Sbjct: 128 GYYTDSKT-GRLLSQPFNSSTPVLYYNKEAFKKAGLDPEQPPKTWQELAADTAKL 181