BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0097.p (267 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2013 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae P... 237 2e-62 RSc0267 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Rso ... 226 5e-59 SMb21126 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Sme... 182 8e-46 CC2169 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr C... 176 3e-44 AGl2700 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu ... 124 2e-28 >PA2013 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae Pseudomonas aeruginosa Length = 265 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/254 (47%), Positives = 165/254 (64%) Query: 6 HLDIDPRGLATLTLNRPDVHNAFDDQLIAHLIDLINEARDDKRTRVLLLASTGKSFSAGA 65 L+IDPRG+ATL L+R + +NAF+ +I L+ I+ D + R+L+L G+ F GA Sbjct: 8 QLEIDPRGVATLWLDRAEKNNAFNAVVIDELLQAIDRVGSDPQVRLLVLRGRGRHFCGGA 67 Query: 66 DLAWMRRMADASRDDNLRDARKLALLMETLNSFPAPTVAKVQGAVMGGGVGLVSCCDIVV 125 DLAWM++ D NL DA+++A LM L + P PT+A VQGAV GGGVGLVSCCD+ + Sbjct: 68 DLAWMQQSVDLDYQGNLADAQRIAELMTHLYNLPKPTLAVVQGAVFGGGVGLVSCCDMAI 127 Query: 126 ASEAAFFALSEVKLGLAPAAISPYVIAKMGVSQARRFFVSGERFSAVRAAAIGLVHEVVL 185 S+ A F LSEV++GL PA I+P+V+ +G ARR+ ++ ERF RA+ +GL+ E Sbjct: 128 GSDDATFCLSEVRIGLIPATIAPFVVKAIGQRAARRYSLTAERFDGRRASELGLLSESCP 187 Query: 186 AQELDAKVLQVIDTLLANGPQAMRAAKQLVQVANPLQVTPELAEYTAGVIADLRASPEGR 245 A EL+++ I LL N P+A+ A K L +++P L YT IA +R SPEG+ Sbjct: 188 AAELESQAEAWIANLLQNSPRALVACKALYHEVEAAELSPALRRYTEAAIARIRISPEGQ 247 Query: 246 EGLRAFLEKDAPAW 259 EGLRAFLEK PAW Sbjct: 248 EGLRAFLEKRTPAW 261 >RSc0267 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Rso Ralstonia solanacearum Length = 264 Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 118/246 (47%), Positives = 160/246 (65%) Query: 14 LATLTLNRPDVHNAFDDQLIAHLIDLINEARDDKRTRVLLLASTGKSFSAGADLAWMRRM 73 +AT+TLNRPDV NAF++ +IA L + + R ++LA G +F AGADL WMR+M Sbjct: 15 VATVTLNRPDVRNAFNETVIAELTGAFHALATEDSVRAIVLAGHGPAFCAGADLNWMRKM 74 Query: 74 ADASRDDNLRDARKLALLMETLNSFPAPTVAKVQGAVMGGGVGLVSCCDIVVASEAAFFA 133 A S D+N DA +LA ++ +++ P P VA+V G GGVGLVS CDIVVA++ A F Sbjct: 75 AGYSDDENRADALRLAEMLRAIHACPKPVVARVHGDTYAGGVGLVSACDIVVAADTAHFC 134 Query: 134 LSEVKLGLAPAAISPYVIAKMGVSQARRFFVSGERFSAVRAAAIGLVHEVVLAQELDAKV 193 LSE +LGL PA ISPYVI +G +RR+F++ ERF+A A +GLVHE+ A+ LDA V Sbjct: 135 LSEARLGLIPATISPYVIRALGEQASRRYFITAERFTAAEAHRLGLVHELAGAEALDATV 194 Query: 194 LQVIDTLLANGPQAMRAAKQLVQVANPLQVTPELAEYTAGVIADLRASPEGREGLRAFLE 253 + L+AN P A+R +K+LV+ + L TA IA +RAS EGREG+++FL Sbjct: 195 DALTAALVANSPNAVRESKRLVREIASAPIDDALLADTANRIAAIRASTEGREGVQSFLG 254 Query: 254 KDAPAW 259 K P W Sbjct: 255 KRKPNW 260 >SMb21126 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Sme Sinorhizobium meliloti Length = 261 Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 101/251 (40%), Positives = 139/251 (55%), Gaps = 1/251 (0%) Query: 9 IDPRGLATLTLNRPDVHNAFDDQLIAHLIDLINEARDDKRTRVLLLASTGKSFSAGADLA 68 ID RG+A +TL R + HNA +I L ++ D R ++L + GKSF AG DL Sbjct: 10 IDQRGVARVTLARSEKHNALSATMIGELTAVVGRLATDASIRAVILDAEGKSFCAGGDLD 69 Query: 69 WMRRMADASRDDNLRDARKLALLMETLNSFPAPTVAKVQGAVMGGGVGLVSCCDIVVASE 128 WMR+ A R + +A +LA++++ LN P P +A+V G GGGVGL+S CD V+A+ Sbjct: 70 WMRQQFSADRPTRIAEATRLAMMLKALNDLPKPLIARVHGNAFGGGVGLISVCDTVIAAS 129 Query: 129 AAFFALSEVKLGLAPAAISPYVIAKMGVSQARRFFVSGERFSAVRAAAIGLVHEVVLAQE 188 A F L+E +LGL PA ISPYVIA+ G ++AR F+S F A A G V VV Sbjct: 130 GAQFGLTETRLGLIPATISPYVIARTGEARARPLFMSARVFGAEEAKVAGFVTTVVDGTM 189 Query: 189 LDAKVLQVIDTLLANGPQAMRAAKQLVQVANPLQVTPELAEYTAGVIADLRASPEGREGL 248 LD V + L P A AK+L + L +T + T +AD + E REG+ Sbjct: 190 LDGAVEAAVTAYLVAAPGAAGRAKRLARSLG-LPITDAVIAATIEQLADTWETDEAREGV 248 Query: 249 RAFLEKDAPAW 259 AF E+ P+W Sbjct: 249 SAFFERRNPSW 259 >CC2169 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr Caulobacter vibrioides Length = 262 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/265 (41%), Positives = 144/265 (54%), Gaps = 7/265 (2%) Query: 1 MTAAAHLDIDPRGLATLTLNRPDVHNAFDDQLIAHLIDLINEARDDKRTRVLLLASTGKS 60 M+ H+D P G T+ +NRPD NAFD IA L + R++ L G + Sbjct: 1 MSPLVHMDSTPEGAVTVWINRPDKKNAFDAATIAALRQTFETLHGAEGVRIVFLRGVGGA 60 Query: 61 FSAGADLAWMRRMADASRDDNLRDARKLALLMETLNSFPAPTVAKVQGAVMGGGVGLVSC 120 FSAGADL+WM + DDN +DA +LA +++ L+ PA TVA V+G GGG GLV+ Sbjct: 61 FSAGADLSWMASAVEWDEDDNRQDALELAHMLKALHDIPALTVALVEGPAFGGGAGLVAA 120 Query: 121 CDIVVASEAAFFALSEVKLGLAPAAISPYVIAKMGVSQARRFFVSGERFSAVRAAAIGLV 180 CD +A A FA SEVKLGL PA ISPYVI +G A+ F +G F A A GLV Sbjct: 121 CDHALALVDAKFAFSEVKLGLTPATISPYVIQALGPRTAKLLFATGRVFDADDAWGFGLV 180 Query: 181 HEVVLAQELDAKVLQVIDTLLAN----GPQAMRAAKQLVQVANPLQVTPELAEYTAGVIA 236 EV E A + D L+A P A+ AK LV ++ L + +A IA Sbjct: 181 DEVF---EDVASLEGARDALIAEMAPCAPGAIGDAKALVNDFVGQKLDKGLIDESARRIA 237 Query: 237 DLRASPEGREGLRAFLEKDAPAWTR 261 R SPEG+EG+RAFL + P+W Sbjct: 238 RRRVSPEGQEGVRAFLARRKPSWVE 262 >AGl2700 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 17 LTLNRPDVHNAFDDQLIAHLIDLINEARDDKRTRVLLLASTG-KSFSAGADLAWMRRMAD 75 LTLNRP+VHNA + + L D I A D R +++ + G +SF +GADL + + Sbjct: 38 LTLNRPEVHNALNAAMTEALTDAIRAASGDGSLRAVVITAAGDRSFCSGADL----KESA 93 Query: 76 ASRDDNLRDARKLALLMETLNSFPAPTVAKVQGAVMGGGVGLVSCCDIVVASEAAFFALS 135 + +A +M + S P +A++ G V+ GG+GLV+ CD+ A++ A F L Sbjct: 94 GGMFLSPNGTNPIANVMRAIESCDKPVIARINGRVLAGGLGLVATCDLAYAADHAEFGLP 153 Query: 136 EVKLGLAPAAISPYVIAKMGVSQARRFFVSGERFSAVRAAAIGLVHEVVLAQELDAKVLQ 195 EV++GL P ++ ++AKM + + G+ +A A +GLV+ ELD + + Sbjct: 154 EVRVGLFPTMVAAKLLAKMPLGGLQEMAYLGQPITAAEAKGLGLVNRTAPLAELDGLIEE 213 Query: 196 VIDTLLANGPQAMRAAKQLVQVANPLQVTPELAEYTAGVIADLRASPEGREGLRAFLEKD 255 V+ L N P A+ A K + + LA + IA + S E REG +AF EK Sbjct: 214 VLAKLRQNAPGAIAAGKAALLAMRDMPSDERLA-FAEDAIAAISGSDEAREGRQAFAEKR 272 Query: 256 APAW 259 P W Sbjct: 273 PPKW 276