BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0085.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella me...   150   8e-37
RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   142   3e-34
PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...   141   5e-34
SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu...   139   3e-33
CC0915 Non COG                                                        138   4e-33

>BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella melitensis
          Length = 157

 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 94/116 (81%)

Query: 18  DEALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWEKDGVTVSELGTRL 77
           D  L L + LCFA+YS + A+++AY+ ILAPL++TYPQ+LVMLVLWE+D  TVSE+G RL
Sbjct: 13  DTNLDLADMLCFAVYSTANALSRAYQPILAPLDLTYPQFLVMLVLWERDDCTVSEIGARL 72

Query: 78  FLDSGTLTPLLKRMESMGLLHRNRDAGDERRVVVSLSDGGRALREKAKAVPQQMSC 133
            LDSGTLTPLLKR+E+ G + R RD  DER+V ++L+D GR LRE+A++VP+Q+ C
Sbjct: 73  NLDSGTLTPLLKRLEAAGRITRRRDPRDERQVRITLTDEGRKLREQAESVPEQIMC 128


>RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 153

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 97/135 (71%), Gaps = 6/135 (4%)

Query: 21  LLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWEKDGVTVSELGTRLFLD 80
           L LD QLCFA+YS  + + K Y+ +L PL +TYPQYLVMLVLWE+D +TVSE+G RLFLD
Sbjct: 13  LALDQQLCFALYSTMIGLNKVYRGLLKPLGLTYPQYLVMLVLWERDALTVSEIGERLFLD 72

Query: 81  SGTLTPLLKRMESMGLLHRNRDAGDERRVVVSLSDGGRALREKAKAVPQQMSCMLPALDQ 140
           S TLTP+LKR+E+ GL+ R R   DER+V+VSL+  G+ L+ +AK VP    C+  A++ 
Sbjct: 73  SPTLTPMLKRLEAAGLIGRQRSDADERQVIVSLTAEGQRLKHRAKDVP---GCVAAAMEC 129

Query: 141 IKALVVELKQVRKGL 155
           + A   EL+ +R  L
Sbjct: 130 VPA---ELEALRTQL 141


>PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 151

 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 99/141 (70%), Gaps = 7/141 (4%)

Query: 19  EALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWEKDGVTVSELGTRLF 78
           E L LDNQLCFA+YS SL MTK YK +L  L +TYPQY+ MLVLWE+DG+TV E+  R+ 
Sbjct: 10  EQLKLDNQLCFALYSTSLQMTKVYKPLLQALGLTYPQYIAMLVLWERDGLTVGEISARML 69

Query: 79  LDSGTLTPLLKRMESMGLLHRNRDAGDERRVVVSLSDGGRALREKAKAVPQQMSCMLPA- 137
            D G+LTPLLKR+E  GL+ R R + DER V++ L+D GRAL+ +A+++P   +C+L + 
Sbjct: 70  TDPGSLTPLLKRLEGEGLITRTRSSEDERVVLLRLTDKGRALQRQAESIP---ACILEST 126

Query: 138 ---LDQIKALVVELKQVRKGL 155
              L Q+ AL  EL  +R  L
Sbjct: 127 GLDLPQLVALKDELLALRGNL 147


>SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 138

 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 95/137 (69%), Gaps = 5/137 (3%)

Query: 23  LDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWEKDGVTVSELGTRLFLDSG 82
           LDN LCFA+YSA+ A T+ YK +L  L++TYPQYLVM+ LWEKD  TV  LG +LFL+S 
Sbjct: 3   LDNFLCFAIYSANHAFTRVYKPLLDELDLTYPQYLVMVALWEKDDQTVGSLGEKLFLESS 62

Query: 83  TLTPLLKRMESMGLLHRNRDAGDERRVVVSLSDGGRALREKAKAVP---QQMSCMLPALD 139
           TLTP+LKR+E+MG + R RD  DER+V V L++ GRALREKA  VP      + M PA  
Sbjct: 63  TLTPMLKRLEAMGYILRTRDKADERQVRVRLTETGRALREKASRVPIGIADATGMEPA-- 120

Query: 140 QIKALVVELKQVRKGLI 156
           ++  L  E+  +R  L+
Sbjct: 121 EVARLKREIAALRASLL 137


>CC0915 Non COG
          Length = 148

 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 87/117 (74%)

Query: 19  EALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWEKDGVTVSELGTRLF 78
           E L LDNQLCFA+Y A+  MT+ Y+ +L  L +TYPQYL MLVLWE    TV  LG  L 
Sbjct: 13  EILRLDNQLCFALYGAANRMTRLYRPLLDALGLTYPQYLAMLVLWEASPRTVGALGEALD 72

Query: 79  LDSGTLTPLLKRMESMGLLHRNRDAGDERRVVVSLSDGGRALREKAKAVPQQMSCML 135
           LDS TLTPLLKR+E+ GL+ R+RD  DERRV+V+L+D GRALR++A  +P+++ C L
Sbjct: 73  LDSSTLTPLLKRLEAGGLVTRDRDPEDERRVIVALTDKGRALRDQAVTIPEKVFCAL 129