BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0080.p (540 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1844 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 ... 746 0.0 cydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Ec... 734 0.0 ZcydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 E... 734 0.0 ECs0768 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1... 734 0.0 STM0740 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1... 730 0.0 >VC1844 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Vch Vibrio cholerae Length = 541 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/525 (66%), Positives = 428/525 (81%), Gaps = 1/525 (0%) Query: 2 VPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKL 61 V + +VV LSRLQFA+TA+YHFLFVPLTLG++++L IMES+YVMT QIYKDMT+FWGKL Sbjct: 12 VTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKL 71 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGW 121 FGINFA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIE L+AFF+ESTFVGLFFFGW Sbjct: 72 FGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGW 131 Query: 122 DKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 D+LS++QHL+VT LVALGSN SALWIL+ANGWM NPVG+EFNFETMRME+VS DV+ NP Sbjct: 132 DRLSKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNP 191 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLG 241 VAQVKFVHTVAAGY T +MF+LG+SA+YLLK RD AFA RSFA+AA FG+A+ LSVIVLG Sbjct: 192 VAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLG 251 Query: 242 DESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATR 301 DESGY GEV +VKLAAIE+EW T PAPA TLFG+PN +E RTDYA+KIP+ LG+IATR Sbjct: 252 DESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATR 311 Query: 302 SADTQVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLK 361 S D QV+G++DL+ EH RIR G+ AY L +L+AG+K+PE A FD++K DLGYGLLLK Sbjct: 312 SLDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLK 371 Query: 362 KYTNNVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP 421 +YT+ V DAT EQI A +D+IP V PLFWSFR MVA GF+ L +F A+F ++++ Sbjct: 372 RYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQ 431 Query: 422 QRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGF 481 ++W+L+ A+ SIPLPWIA E GW VAEYGRQPW + ILP +++AS+L G + S+ Sbjct: 432 KKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAI 491 Query: 482 ILFYTFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSPGDV 526 + YT L+ E+ LMVK+ R GPSSL TG+YH+E +G E V Sbjct: 492 LALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFE-QGAESVQDQV 535 >cydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Eco Escherichia coli K12 Length = 523 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/518 (66%), Positives = 419/518 (80%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 4 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 63 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+L Sbjct: 64 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG 123 Query: 126 RKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVALGSNLSALWIL+ANGWM NP+ ++FNFETMRME+VS ++++ NPVAQV Sbjct: 124 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQV 183 Query: 186 KFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LG+SAWY+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 184 KFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 243 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSADT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+ +EE +A++IPY LG+IATRS DT Sbjct: 244 YEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDT 303 Query: 306 QVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLKKYTN 365 V+G+K+L +HE RIRNGM AY+ L +L++G R +F+ +KKDLGYGLLLK+YT Sbjct: 304 PVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 363 Query: 366 NVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAPL+++FR MVA GFL L I + SFW + + ++ ++WL Sbjct: 364 NVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 423 Query: 426 LRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 424 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLY 483 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSP 523 T LV E+ LM K+ARLGPSSL TG+YH+E P Sbjct: 484 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQP 521 >ZcydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 EcZ Escherichia coli O157:H7 EDL933 Length = 523 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/518 (66%), Positives = 419/518 (80%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 4 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 63 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+L Sbjct: 64 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG 123 Query: 126 RKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVALGSNLSALWIL+ANGWM NP+ ++FNFETMRME+VS ++++ NPVAQV Sbjct: 124 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQV 183 Query: 186 KFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LG+SAWY+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 184 KFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 243 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSADT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+ +EE +A++IPY LG+IATRS DT Sbjct: 244 YEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDT 303 Query: 306 QVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLKKYTN 365 V+G+K+L +HE RIRNGM AY+ L +L++G R +F+ +KKDLGYGLLLK+YT Sbjct: 304 PVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 363 Query: 366 NVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAPL+++FR MVA GFL L I + SFW + + ++ ++WL Sbjct: 364 NVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 423 Query: 426 LRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 424 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLY 483 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSP 523 T LV E+ LM K+ARLGPSSL TG+YH+E P Sbjct: 484 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQP 521 >ECs0768 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Ecs Escherichia coli O157:H7 Length = 523 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/518 (66%), Positives = 419/518 (80%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 4 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 63 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+L Sbjct: 64 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG 123 Query: 126 RKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVALGSNLSALWIL+ANGWM NP+ ++FNFETMRME+VS ++++ NPVAQV Sbjct: 124 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQV 183 Query: 186 KFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LG+SAWY+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 184 KFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 243 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSADT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+ +EE +A++IPY LG+IATRS DT Sbjct: 244 YEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDT 303 Query: 306 QVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLKKYTN 365 V+G+K+L +HE RIRNGM AY+ L +L++G R +F+ +KKDLGYGLLLK+YT Sbjct: 304 PVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 363 Query: 366 NVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAPL+++FR MVA GFL L I + SFW + + ++ ++WL Sbjct: 364 NVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 423 Query: 426 LRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 424 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLY 483 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSP 523 T LV E+ LM K+ARLGPSSL TG+YH+E P Sbjct: 484 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQP 521 >STM0740 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Sty Salmonella typhimurium LT2 Length = 522 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/519 (66%), Positives = 417/519 (80%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 3 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 62 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+LS Sbjct: 63 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLS 122 Query: 126 RKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVALGSNLSALWIL+ANGWM NP+ A+FNFETMRME+VS ++++ NPVAQV Sbjct: 123 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFNFETMRMEMVSFSELVLNPVAQV 182 Query: 186 KFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LG+SA+Y+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 183 KFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 242 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSADT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+ ++ A++IPY LG+IATRS DT Sbjct: 243 YEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSVDT 302 Query: 306 QVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLKKYTN 365 V+G+KDL +HE RIRNGM AY L +L+AG R +F+ +KKDLGYGLLLK+YT Sbjct: 303 PVIGLKDLMVQHEERIRNGMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 362 Query: 366 NVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAPL+++FR MVA GFL L I + SFW + + ++ ++WL Sbjct: 363 NVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 422 Query: 426 LRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 423 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICGLY 482 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSPG 524 T LV E+ LM K+ARLGPSSL TG+YH+E P Sbjct: 483 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQPA 521