BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0078.p         (190 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1241 [K] COG1510 Predicted transcriptional regulators Rso Ral...   261   9e-70
AGl1535 [K] COG1510 Predicted transcriptional regulators Atu Agr...   223   3e-58
BMEII0763 Non COG                                                     218   4e-57
MJ1563 [K] COG1510 Predicted transcriptional regulators Mja Meth...    61   1e-09
PH0289 [K] COG1510 Predicted transcriptional regulators Pho Pyro...    60   2e-09

>RSp1241 [K] COG1510 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 186

 Score =  261 bits (666), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 148/183 (80%), Gaps = 2/183 (1%)

Query: 6   LSPLMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65
           LSPL QRF+ HFGEMGSRWGINRTVGQIYALLY     +NADEIAE L FSRSNVS+GLK
Sbjct: 3   LSPLKQRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLK 62

Query: 66  ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125
           EL+SW+LV+L HKPGDRREYF  P DIW IF+ L EERR+REI+PTLS+LRD +LE+PG 
Sbjct: 63  ELESWKLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPGD 122

Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFR--VG 183
            DD+  Q RM++MY LI L ++WFDDVQ+L  + L  LMKMG+KV+KLL++++K    VG
Sbjct: 123 PDDRHAQARMKEMYRLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKLAVVVG 182

Query: 184 GSS 186
           G S
Sbjct: 183 GKS 185


>AGl1535 [K] COG1510 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 214

 Score =  223 bits (567), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 133/175 (76%)

Query: 6   LSPLMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65
           LSPL+Q F+ HFGEMGSRWGINRTVGQ+YALLYI  + L ADEI E L  SRSNVSM LK
Sbjct: 27  LSPLVQSFVLHFGEMGSRWGINRTVGQVYALLYISPQPLCADEIVEALGISRSNVSMSLK 86

Query: 66  ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125
           ELQ+W L  L H PGDRR++F  P D+W I + L EER++REI+PTLS+LR+ L+E P +
Sbjct: 87  ELQAWNLAILKHFPGDRRDFFTTPDDVWQILRTLAEERKKREIDPTLSVLREILMETPEN 146

Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKF 180
           +D++  Q+R+ +M  LIE  + W+DDV+RL  E L SL+ +GSKV KLL+ +DK 
Sbjct: 147 EDERHAQRRIDEMKTLIEQLTGWYDDVKRLETERLASLLALGSKVTKLLEAKDKI 201


>BMEII0763 Non COG
          Length = 194

 Score =  218 bits (556), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 136/188 (72%), Gaps = 3/188 (1%)

Query: 6   LSPLMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65
           LSP++Q F+ HFGEMGSRWGINRTVGQIYALLY+    L ADEI E L  SRSNVSMG++
Sbjct: 3   LSPIVQSFVLHFGEMGSRWGINRTVGQIYALLYLSPEPLCADEIVEALGVSRSNVSMGIR 62

Query: 66  ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125
           ELQ W LV L H PGDRR++F  P D+W I + L EER++REI+PTLS+LR+ L+E P  
Sbjct: 63  ELQGWNLVLLKHIPGDRRDFFTTPDDVWQILRTLAEERKKREIDPTLSVLREVLMEQPQD 122

Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFRV--- 182
             D+  Q RM+DMY LIE  ++W+DDV++L  + L SL+ +G+KV + L+  D+      
Sbjct: 123 DSDRYAQDRMKDMYSLIERLTNWYDDVKKLDTDRLTSLLALGAKVTRFLETTDRIVALGR 182

Query: 183 GGSSNEKE 190
           G +S +KE
Sbjct: 183 GRTSAKKE 190


>MJ1563 [K] COG1510 Predicted transcriptional regulators Mja
          Methanococcus jannaschii
          Length = 152

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query: 13 FISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLKELQSWRL 72
           I  F E+    G+N++VG +YA+LY+  + L   +I E L  S+ NVSM LK+L+    
Sbjct: 11 IIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGF 70

Query: 73 VKLLHKPGDRREYFEP 88
          V+ +   G+R+ Y+E 
Sbjct: 71 VRKVWIKGERKNYYEA 86


>PH0289 [K] COG1510 Predicted transcriptional regulators Pho Pyrococcus
           horikoshii
          Length = 169

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 17  FGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLKELQSWRLVKLL 76
           F     R G +  VG IY  L++ GR ++  EIAE   +S S+VS  ++ L+   LV+ +
Sbjct: 14  FANTARRLGQSELVGYIYGALFLSGRPMSLGEIAEITGYSLSHVSSAMRVLEGVGLVQRV 73

Query: 77  HKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDAL--LEAPGSKDDKEVQKR 134
            KPGDR+ YF    +  +       E+  R+I+ T   L  AL  LE     + +E++K+
Sbjct: 74  KKPGDRKAYFIATKNFSEWRSSAFYEKILRDIDETRENLLRALKELEHEKGSEVEEIKKK 133

Query: 135 M 135
           +
Sbjct: 134 L 134