BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0071.p         (232 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4530 [O] COG0225 Peptide methionine sulfoxide reductase Mlo M...   249   4e-66
slr1795 [O] COG0225 Peptide methionine sulfoxide reductase Syn S...   194   1e-49
RSc0764 [O] COG0225 Peptide methionine sulfoxide reductase Rso R...   163   4e-40
DR1849 [O] COG0225 Peptide methionine sulfoxide reductase Dra De...   159   5e-39
SSO1503 [O] COG0225 Peptide methionine sulfoxide reductase Sso S...   156   4e-38

>mll4530 [O] COG0225 Peptide methionine sulfoxide reductase Mlo
           Mesorhizobium loti
          Length = 195

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 142/183 (77%)

Query: 48  TATVVLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYD 107
           + T + AGGCFWGVQGVFQH +GV +AVSGY GG  D A Y  V +G TGHAE+V++TYD
Sbjct: 9   SETAIFAGGCFWGVQGVFQHVKGVSKAVSGYTGGAKDDAVYETVGTGRTGHAESVEITYD 68

Query: 108 PRKISYGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAK 167
           P K++YGQ+LQ+YFSVAH+PTQLN QGPD GTQYRS IF  ++ Q +  Q+YI Q++ AK
Sbjct: 69  PSKVTYGQLLQVYFSVAHNPTQLNFQGPDSGTQYRSTIFAENDTQKQIAQSYIDQLDKAK 128

Query: 168 VFSAPIVTQVTPLQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRADPV 227
           ++ APIVT +   + FY AE+YHQD+ TL+P  PYI YNDLPK++NL++++PA+Y   PV
Sbjct: 129 LYPAPIVTTIETGKTFYPAENYHQDFLTLNPTYPYIVYNDLPKVANLKQLFPALYSEKPV 188

Query: 228 LVF 230
           LV 
Sbjct: 189 LVL 191


>slr1795 [O] COG0225 Peptide methionine sulfoxide reductase Syn
           Synechocystis
          Length = 214

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%)

Query: 15  LCLALACASTFAAEAAVAVPAP--SGKAVLASTANTATVVLAGGCFWGVQGVFQHTQGVL 72
           + LA+A  S   +  +  +P P      V  +   T   V AGGCFWG++ +F+  +GV 
Sbjct: 1   MGLAIAVGSFLISPFSKVIPDPVVDINPVSTTARGTEKAVFAGGCFWGLEAMFEEVRGVK 60

Query: 73  QAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQIYFSVAHDPTQLNR 132
              +GY+GG   +A Y+ VS G T HAE++++ YDP ++SYG++L+I+FSV HDPTQ+NR
Sbjct: 61  DVQTGYSGGTEATANYARVSGGGTDHAESIEIVYDPAQVSYGELLKIFFSVGHDPTQVNR 120

Query: 133 QGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSAPIVTQVTPLQGFYRAEDYHQD 192
           QG D G QYRSAIF  + +Q +  QAYI Q+  ++ F   I T+V     FY AEDYHQD
Sbjct: 121 QGVDQGRQYRSAIFATTPEQKQVAQAYIDQLEESQAFDQAIATEVNDFDAFYPAEDYHQD 180

Query: 193 YATLHPNQPYIAYNDLPKISNLQKMY 218
           +   +P  PY+  +DLPK+   ++ Y
Sbjct: 181 FVQRNPAHPYVLVHDLPKLRKFRQQY 206


>RSc0764 [O] COG0225 Peptide methionine sulfoxide reductase Rso Ralstonia
           solanacearum
          Length = 191

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 50  TVVLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPR 109
           T VL GGCFW  + VFQ  QGV   VSGYAGG  +  TY  V  G TGHAE V+V +DP 
Sbjct: 14  TAVLGGGCFWCTEAVFQQVQGVHSVVSGYAGGHLERPTYRAVCGGDTGHAEVVRVEFDPA 73

Query: 110 KISYGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVF 169
            I Y +IL I+F+  HDPT L RQG D G QYRSA+F  S +Q     A I  ++AA VF
Sbjct: 74  VIPYREILDIFFAT-HDPTTLERQGNDIGPQYRSAVFAQSPEQFAEAGATIRALSAANVF 132

Query: 170 SAPIVTQVTPLQG----FYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMY 218
            APIVT+V    G    F++AED HQ+Y   HP Q Y A+   PK++  ++ +
Sbjct: 133 DAPIVTEVVDASGGKVPFWQAEDEHQNYFRDHPAQGYCAFVISPKVAKFRERF 185


>DR1849 [O] COG0225 Peptide methionine sulfoxide reductase Dra Deinococcus
           radiodurans
          Length = 206

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 1/167 (0%)

Query: 52  VLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKI 111
           + AGGCFW  + V Q  +GV +  SGY GG   +  Y  V  G TGHAEAV+VT+DP +I
Sbjct: 36  IFAGGCFWCTEAVMQDLRGVQKVESGYIGGTVPNPDYRSVCGGQTGHAEAVRVTFDPNQI 95

Query: 112 SYGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSA 171
           SY  +L ++F+  HDPT LNRQG D GTQYRSA+F  +++Q +  +  I Q+    VF  
Sbjct: 96  SYRDLLGLFFAT-HDPTSLNRQGADVGTQYRSALFPLTQEQEQTAREMIEQLGTEDVFGR 154

Query: 172 PIVTQVTPLQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMY 218
           PIVT + P   FY AEDYHQ+Y   +P Q Y      PK++ L++ Y
Sbjct: 155 PIVTSIEPASTFYVAEDYHQNYYKNNPGQGYCMAVISPKVAKLRQYY 201


>SSO1503 [O] COG0225 Peptide methionine sulfoxide reductase Sso Sulfolobus
           solfataricus
          Length = 177

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 53  LAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKIS 112
           L GGCFW  + V++  +GV+    GY+GG   + TY  V + TTGHAE VQ+T+D   IS
Sbjct: 6   LGGGCFWCTEAVYKRVKGVISVKPGYSGGHVPNPTYEDVCTDTTGHAEVVQITFDSSIIS 65

Query: 113 YGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSAP 172
           Y +IL+I+F + HDPT LNRQG D GTQYRS I   +E+Q +  +  I ++   K     
Sbjct: 66  YREILEIFFEI-HDPTTLNRQGNDVGTQYRSIILYHNEEQRKIAEEMIREVE--KRIGKK 122

Query: 173 IVTQVTPLQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYP 219
           +VT++ P + FY AEDYH D+   H   PY      PK+    K++P
Sbjct: 123 VVTELKPFEVFYEAEDYHHDFYDKHKYNPYCRLVISPKVKKFMKLFP 169