BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0066.p         (443 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1875 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...    68   5e-11

>PA1875 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 425

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 167/391 (42%), Gaps = 18/391 (4%)

Query: 29  AAVMAMSLGLLSLPAGAVSLGDLVKQAAFNNPAAVARQRAVDAAAEGISSAKWQFFPTPS 88
            A+  +SLGL  + A A+ L   V+     +P   +     D A   +  AK  ++P+ +
Sbjct: 17  GAIWLLSLGL-PMFASAMPLDQAVRAGLAIHPEVRSAMAEADRAGTEVEMAKGGYYPSVT 75

Query: 89  MSVERAGVTSSRDISYNGDDTVVTLRLQQTLWSGGRLTAQLEQAGHNHESAGEALREQRF 148
           MS    G     D      + V  L   Q L+  GR+T++++ A        EA+   R 
Sbjct: 76  MS----GGPQEFDFG----EIVYDLTASQMLYDWGRVTSKVDSASATQRKLSEAVLVARD 127

Query: 149 RLAEQVISQYSLWVRSDLATEANQKNLKALEDFLAQSQRREKEGAAARVDVTLVRXRGRR 208
             A  ++  Y   + S+   EA +++++ L+     +Q R  +G A R ++        R
Sbjct: 128 DAALDIVETYLDVLASERRVEAVREHIQRLDGIREMTQARGGDGYADRSELDRANLELSR 187

Query: 209 DQALTDLLGAKASRQSARLQLEQLVGLPLSDEELRADVAKMSVSEDLPALTES-MLESSP 267
            Q    L   K + Q AR Q   LVG   +D     +   MS+   L A   + ++  SP
Sbjct: 188 AQEQLSL--EKGNLQDARNQYAILVGQEPAD---LVEPEPMSLQRYLAASDMARVIRESP 242

Query: 268 LLKRLRADAKVQESAIQIRSASYWPEVYARLEHQRGNFSVPHTPNANRAF-IGMQMQLGA 326
           L ++   DA V E+ ++   AS  P++   LE       +   P ++    +  +M    
Sbjct: 243 LQRKALEDANVAEAEVREAKASLLPQL--NLEASALRREIGGHPESDSVVSLRFRMDTFQ 300

Query: 327 GLSLGSEVAAAQGRYQSALLAVDAARLELISQIAATYTEYQQAEARARNLEDVAVSSEEV 386
           GLS      AAQ R +SA  + DA + ++  Q+   +        R ++L      SE+V
Sbjct: 301 GLSNFRRPTAAQQRLESAKWSADAMQRDIRRQLQNLFDNGDTLRWREQSLTQQVTESEQV 360

Query: 387 LASYTRQYLSGRRSWLDVMNAAREVVQTDLQ 417
              Y  Q+  GRR  +D++N  RE  + + Q
Sbjct: 361 GELYREQFEVGRRDVIDLLNVQRERFEAERQ 391