BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0052.p (414 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA... 284 3e-76 AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-... 281 2e-75 BMEI0169 [KE] COG1167 Transcriptional regulators containing a DN... 273 6e-73 PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-... 272 9e-73 SMb20039 [KE] COG1167 Transcriptional regulators containing a DN... 264 3e-70 >RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 490 Score = 284 bits (726), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 157/415 (37%), Positives = 241/415 (58%), Gaps = 8/415 (1%) Query: 2 FEELTAQGVVEPRRGSGFFVCA--TPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRL 59 +E L AQG +E RRGSGF+V P + + +R +DV WL+R Sbjct: 79 YERLVAQGYLESRRGSGFYVKERQAPLPEEPPAPPASARKIDVAWLLRNMFHSAEPRKAP 138 Query: 60 GDGFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATS 119 G GF P WL + + + R +G+ G+LPLRQ L +LA+ I A Sbjct: 139 GIGFLPNGWLDGELIANALRALGRQNGNQFLAWGTPQGFLPLRQQLQTRLAELEIGARPD 198 Query: 120 QIVLTHGANQALDIVIRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIE 179 QIV+T G Q+LD++ R +++PGD VLV +P +++++G+ GA+++G+P +GPD+ Sbjct: 199 QIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAAQGAQVIGVPYTTEGPDLV 258 Query: 180 ALERELKLPGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPA 239 ALE +++ +P L S+ HNPT + S KA ++L+LA+++ LIVE+D + D P Sbjct: 259 ALEGLVQVR-RPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPP 317 Query: 240 TAP--RIATLDQLRRTLYIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYC 297 P R+A+LDQLRR +Y+GSFSK+++A LRVGFIACH +LA +L D K+L +++ E Sbjct: 318 GHPATRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEIN 377 Query: 298 ERTLDVILSDGHFSRHTARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFT 357 ER L +L++G + +H R+R RL A D L++LG +LF M++WA T Sbjct: 378 ERVLYKVLTEGQYRKHVERVRARLDRARDGVQRSLERLGLKLFAQQGAGMFIWADTGRDT 437 Query: 358 DARPLAQALMQHHVVLAPGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAMAALLDQ 412 +A +A+A + V APGS+F S W RFN+ +DP +A L++ Sbjct: 438 NA--IARAGHEEGYVFAPGSLFSPSQMPST-WMRFNIATSTDPEMLRFLADQLER 489 >AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 449 Score = 281 bits (719), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/407 (37%), Positives = 229/407 (56%), Gaps = 3/407 (0%) Query: 2 FEELTAQGVVEPRRGSGFFVCA-TPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRLG 60 ++ L A G + R GSGFFV P + E L RA+D +W+ R+ L + G Sbjct: 41 YDRLVADGTISSRPGSGFFVAGPLAPLSLADIEPRLDRAVDPLWVSRQALDDGSALAKPG 100 Query: 61 DGFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQ 120 G+ P W+ L + + + R L YGS G LPLRQ L ++LA+HG++A SQ Sbjct: 101 CGWLPASWMPQEALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEHGVQAGASQ 160 Query: 121 IVLTHGANQALDIVIRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEA 180 I+LT QA+D++ R ++PGD V+VD+P Y+ + L+ +IVG+P GPD+ Sbjct: 161 IMLTDSGTQAIDLLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPL 220 Query: 181 LERELKLPGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPAT 240 E+ LK +P L+ T S HNPT + S AH++L LA++ I+E+D FADF+ Sbjct: 221 FEQALK-EHQPRLYITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQA 279 Query: 241 APRIATLDQLRRTLYIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERT 300 APR+A D L R + IGSFSK++SA++R GFIA R L D+K+ + + Sbjct: 280 APRLAAFDGLNRVVQIGSFSKTLSASVRCGFIAAPRAWVEALTDLKIATAFGGTHFSAAL 339 Query: 301 LDVILSDGHFSRHTARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDAR 360 + +L+DG + +H LR+RLA A A +L+ +G + PQ M+LW R P TDA Sbjct: 340 VLSLLTDGSYRKHVEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRLPEGTDAA 399 Query: 361 PLAQALMQHHVVLAPGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAMA 407 +AQ + VVLAPG++F +++ + RFNV Q+ P+ +A Sbjct: 400 DVAQRALARQVVLAPGNVFS-SSQNASGFMRFNVSQMVGPQVMTVLA 445 >BMEI0169 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Bme Brucella melitensis Length = 484 Score = 273 bits (698), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 224/407 (55%), Gaps = 4/407 (0%) Query: 2 FEELTAQGVVEPRRGSGFFVC--ATPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRL 59 ++ L A+G+++ RRG+GF+V A P R +D W+MR+ L+ + L+ Sbjct: 71 YDRLVAEGIIQSRRGAGFYVSERARQPFSLAATAPHKDRQIDPFWVMRQSLEAESRTLKP 130 Query: 60 GDGFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATS 119 G G+ P WL L + + + R L YG G+ PLRQHL +L + GI+ A Sbjct: 131 GCGWLPDGWLPQEALRRALRTIARDDQSNLTTYGEPLGFRPLRQHLAHRLGEQGIDIAGG 190 Query: 120 QIVLTHGANQALDIVIRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIE 179 +I+LT QA+D++ R ++PGD VLVD+P Y+ L ++VG+P GPD++ Sbjct: 191 EILLTDSGTQAIDLICRYLLQPGDTVLVDDPCYFNFQAVLLTHRVKLVGVPYTHSGPDLD 250 Query: 180 ALERELKLPGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPA 239 A P L+ + + HNPT +P AH++L+LA+ H +VE++ F DF P+ Sbjct: 251 AFANA-ATEHAPKLYISNAGLHNPTGGIMTPATAHRLLKLAEAHGITLVEDNIFGDFHPS 309 Query: 240 TAPRIATLDQLRRTLYIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCER 299 P +A LD R L+IGSFSK++SAA RVG+IA RD L D+K+ + + Sbjct: 310 PTPLLAELDGFERVLHIGSFSKTLSAAARVGYIAGRRDWIEGLTDLKLATSFGCNALSPQ 369 Query: 300 TLDVILSDGHFSRHTARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDA 359 + +L DG + RH LR RLA A ++L+ G +L+ PQ M+LWAR P D+ Sbjct: 370 IVHALLIDGTYRRHIESLRTRLADAMTLTANRLKATGLDLWTKPQGGMFLWARLPDGMDS 429 Query: 360 RPLAQALMQHHVVLAPGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAM 406 P+A+ ++ VVLAPG++F + + RFNV Q +DP A + Sbjct: 430 GPVARHALEKGVVLAPGNVFSPSCT-AAGFLRFNVAQSADPYIYAVL 475 >PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 458 Score = 272 bits (696), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 155/408 (37%), Positives = 225/408 (55%), Gaps = 7/408 (1%) Query: 2 FEELTAQGVVEPRRGSGFFVCATPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRLGD 61 ++ L A G++E R GSGFFV A P + + + W Q L+LG Sbjct: 57 YDRLVALGMLESRHGSGFFV-AEAPAATTDLDSEWHEGAENAW---GQFSGSSTKLKLGC 112 Query: 62 GFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQI 121 G+ P W L ++V R+ + LF Y + G LRQH+ ++L I QI Sbjct: 113 GWIPDSWREVEELSYAIRQVARSELAGLFDYSTPLGLPALRQHIQKRLRLIDIHVDPEQI 172 Query: 122 VLTHGANQALDIVIRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEAL 181 + T GA+ ALD+++R ++PGD V+V+ PGYY L+ LK G +++G+PR GPD AL Sbjct: 173 LTTTGASHALDLLVRTLLKPGDVVVVENPGYYNLFNLLKFHGVKMLGVPRTRHGPDTAAL 232 Query: 182 ERELKLPGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPATA 241 E L+ KP FT S+ HNPT + SP AH++LQLA++HD IVE+D +ADF+ + Sbjct: 233 ETILR-AHKPKFLFTNSMYHNPTGTSLSPSVAHRVLQLAEQHDFHIVEDDIYADFQNGPS 291 Query: 242 PRIATLDQLRRTLYIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTL 301 R+ATLD LRR +Y+ SFSK++S +LRVG++ +L LAD+KM + S + E + Sbjct: 292 TRLATLDSLRRVIYLASFSKTLSCSLRVGYLIAGPELIRRLADVKMYTSIGSQRFAECVV 351 Query: 302 DVILSDGHFSRHTARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDARP 361 +L++G + + RLR+RL A L G E+F P M++WAR + A Sbjct: 352 STMLANGSYRKLVQRLRQRLTRQMAATLRVLGDNGWEVFAEPVGGMFVWARIGDYPFAEL 411 Query: 362 LAQALMQHHVVLAPGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAMAAL 409 A A + V+L+PGS F + E S W R N+ SDPR A A Sbjct: 412 QAVA-TRLDVLLSPGSGFSPEGEES-DWLRINIAYASDPRALAFFEAF 457 >SMb20039 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Sme Sinorhizobium meliloti Length = 474 Score = 264 bits (674), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 159/409 (38%), Positives = 232/409 (56%), Gaps = 3/409 (0%) Query: 2 FEELTAQGVVEPRRGSGFFVCA-TPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRLG 60 +E L A+GV+ R GSGFFV A P E + RA+D +W+ R+ L+ G LR G Sbjct: 64 YERLQAEGVIRSRPGSGFFVAAPLAPLTLAEIGPRVDRAVDPLWISRQALEPGEGVLRPG 123 Query: 61 DGFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQ 120 G+ P W+ + L + + + R L YG+ G LPLRQ L +++AQHGIEA+ Q Sbjct: 124 CGWLPPHWMPEEGLRRALRGIARGAAATLVDYGAPLGLLPLRQLLTRRVAQHGIEASPDQ 183 Query: 121 IVLTHGANQALDIVIRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEA 180 I+LT QA+D++ R ++PGD VLVD+P Y+ + L+ ARI G+P GPDI Sbjct: 184 ILLTESGTQAIDLLCRFLLKPGDAVLVDDPCYFNFHALLRAHQARIFGVPYTPSGPDIGR 243 Query: 181 LERELKLPGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPAT 240 L KP L+ T S HNPT + SP H++L+LA++ I+E+D FADF+ Sbjct: 244 FAEALA-EHKPRLYITNSALHNPTGAMLSPLVGHRLLKLAEQAGLTIIEDDIFADFEETP 302 Query: 241 APRIATLDQLRRTLYIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERT 300 APR+A D L R ++IGSFSK++SAA+R GFI RD L D+K+ ++ + Sbjct: 303 APRLAAFDGLERVVHIGSFSKTLSAAVRCGFIVAPRDWVEALTDLKIATCFGAAGFSSEL 362 Query: 301 LDVILSDGHFSRHTARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDAR 360 + +L +G + +H +R+RLA A +L ++G + PQ M+LW R P DA Sbjct: 363 VLTLLKNGSYRKHMETVRQRLAGAMAETAQRLARIGITPWIEPQAGMFLWCRLPDGIDAA 422 Query: 361 PLAQALMQHHVVLAPGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAMAAL 409 LA+ + +VLAPG++F + + + RFNV Q D R +AAL Sbjct: 423 RLARQALARGIVLAPGNVFS-HAQTASGFLRFNVAQSEDERLFRELAAL 470