BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0051.p (518 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 394 e-109 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 340 3e-93 RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 338 2e-92 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 336 7e-92 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 332 1e-90 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust. Identities = 233/492 (47%), Positives = 331/492 (67%), Gaps = 8/492 (1%) Query: 4 LGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLK----TERLMGDW 59 + +M IG RL FA+++A +A + + RL+ +T +++++ + ++ + Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 60 YTNLTAGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEEKALFQKI 119 Y GI L + + P + + AA +++++ ++E LL T + KALF++ Sbjct: 63 YK--ANGILSNLLLVTT--PEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQ 118 Query: 120 GEQRKVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMREMVDIQRKDIDDTA 179 + R Y +S + L A NV+EA L + Y L+ +MVD Q +++ Sbjct: 119 FDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDV 178 Query: 180 KEIDNIAAQSRILIVVLEGLILLLGIVLARTLTLGITKPLQTAVVVSRKVAEGDLATQVQ 239 E A ++I ++VL L LL I +T IT+P+ A+ ++ VA+G+L ++ Sbjct: 179 SEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLE 238 Query: 240 VTSRDETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQASSL 299 V ++DE G+LL +LK M ++L GIV+ VR GTDTI+ AS+E+A+GN+DLS RTEQQASSL Sbjct: 239 VDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSL 298 Query: 300 EETASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRKIV 359 EETA+AME+L STV+QNADNA++AS+LA +AS VA +GG V + + TM IN SSRKIV Sbjct: 299 EETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIV 358 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIN 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LI Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIE 418 Query: 420 DSVEKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQMDQ 479 DSV V G+ VE+AG +++VV+ +++VT+IV+EISA+S EQ+ GIEQIN AITQMD+ Sbjct: 419 DSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDK 478 Query: 480 VTQQNAALVEQA 491 TQ+NA+LVE++ Sbjct: 479 ATQENASLVEES 490 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 340 bits (873), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 185/283 (65%), Positives = 227/283 (80%), Gaps = 8/283 (2%) Query: 206 VLARTLTLGITKPLQTAVVVSRKVAEGDLATQVQVTSR----DETGQLLQSLKDMNDSLR 261 VL RTL +PL+ A+ V ++A GDLAT++ +R DET +L+ ++ M SL+ Sbjct: 213 VLGRTLV----RPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQ 268 Query: 262 GIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQASSLEETASAMEELISTVRQNADNAR 321 +V VRTG+D+I++A+ +IAAGN DLS RTEQQASSLEETAS+MEEL S V+QNADNAR Sbjct: 269 KMVGQVRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNAR 328 Query: 322 QASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAV 381 QAS LA +AS VA +GG VV +VV+TM IN SS+KI DII VI+GIAFQTNILALNAAV Sbjct: 329 QASTLAVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAV 388 Query: 382 EAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELINDSVEKVGDGSRLVEQAGVTMQE 441 EAARAGEQGRGFAVVA EVRSLAQRSA AAKEIKELI+DSV++V +GS+LV +AG + E Sbjct: 389 EAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDE 448 Query: 442 VVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQMDQVTQQN 484 VV +V+ VTDI+ EISAAS EQ+SGIEQ+N A+ QMD+VTQQN Sbjct: 449 VVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQN 491 >RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 338 bits (867), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 238/513 (46%), Positives = 306/513 (59%), Gaps = 62/513 (12%) Query: 4 LGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWYTNL 63 + ++I RL L V+ F A V + L + + A +E ++ L + R +G Sbjct: 1 MKTLSIKARLALVLFVLAVFLAGVGALGLVGNLRSNAALKETYSNNLASTRALG------ 54 Query: 64 TAGIRRTLAIAKSSDPSLA---AYFAEEAAASTKSSSEYQKQV--------EGL---LVT 109 LA AK + A A F + A +T + S Q Q+ E L T Sbjct: 55 -------LAEAKLAQARTALDRAIFETDPAKTTDAISRIQAQIGNSEKAWAEYLNLPFST 107 Query: 110 PEEKALFQKIGEQRKVYLSSRDQIVKLKAAGNVE-------EAMRLLETTFVP-TAATYQ 161 PEE+ + GE +K RD I+K A VE +A R L +P TY Sbjct: 108 PEEEKV---AGEAKK----QRDLIIKDNIAAAVEALKRGDKDAARQLAVEQIPYNFRTYA 160 Query: 162 KLMREMVDIQRKDIDDTAKEIDNIAAQSRILIVVLEGLILLLGIVLART----------L 211 + IQ ++ E A+QS +GL+ IV+A L Sbjct: 161 SQSDRLNAIQ-TEVSAALYE----ASQS-----FFKGLVWTFVIVIAAGLALAAGCYLIL 210 Query: 212 TLGITKPLQTAVVVSRKVAEGDLATQVQVTSRDETGQLLQSLKDMNDSLRGIVANVRTGT 271 + I+ PL +V R++A G+L T V+V SRDE G L++ L+ M D L+ V VR G+ Sbjct: 211 SRAISLPLAEMLVHFREIASGNLTTDVRVRSRDEMGVLMEGLQQMQDKLKATVLTVRHGS 270 Query: 272 DTISTASAEIAAGNLDLSGRTEQQASSLEETASAMEELISTVRQNADNARQASQLAQSAS 331 ++I++A+ +IAAGN +LS RTE+QASSLEETAS+MEEL S V+QNADNARQAS LA++AS Sbjct: 271 ESIASATQQIAAGNTNLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASTLAENAS 330 Query: 332 SVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 391 +A QGG VV VV TM I+ SSRKI DII+VI+GIAFQTNILALNAAVEAARAGEQGR Sbjct: 331 GIAMQGGAVVQDVVTTMAQISESSRKITDIIAVIEGIAFQTNILALNAAVEAARAGEQGR 390 Query: 392 GFAVVASEVRSLAQRSASAAKEIKELINDSVEKVGDGSRLVEQAGVTMQEVVSSVRHVTD 451 GFAVVA EVR+LAQRSA AAKEIK LI DS +V GS LV +AG TM E+V +V+ VTD Sbjct: 391 GFAVVAGEVRTLAQRSAGAAKEIKSLIEDSATRVESGSSLVARAGKTMDEIVVAVKRVTD 450 Query: 452 IVAEISAASAEQTSGIEQINLAITQMDQVTQQN 484 I+ EISA SAEQ++GIEQIN A+TQMD VTQQN Sbjct: 451 IMGEISAGSAEQSTGIEQINEAVTQMDDVTQQN 483 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 336 bits (862), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 218/491 (44%), Positives = 298/491 (60%), Gaps = 18/491 (3%) Query: 3 ILGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWYTN 62 +L + I RL L +++ + ++ L L + A E + + +G+ + Sbjct: 1 MLARLTIRTRLVLTVSILFLLALLIGVAGLLGLRDANGAHEETYRNQFPSALALGESDLS 60 Query: 63 LT---AGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEEKALFQKI 119 LT + + + + D EE T S + ++K + L EE L +++ Sbjct: 61 LTRARTALDKAMLYPEDKDAMQLLDRTEELI--TGSDAAWKKYL-ALPHGDEETRLSKEV 117 Query: 120 GEQRKVYLSSRDQIVKLKAAGNVEEAMRLLET----TFVPTAATYQKLMREMVDIQRKDI 175 G +R+ S I+K A + A +++ +F Q L ++ + + + Sbjct: 118 GTKREAAAGSLRDIIKALRASDRAAADAIMDKRVSKSFREANDASQALGKQQLTFSKANF 177 Query: 176 DDTAKEIDNIAAQSRILIVVLEGLILLLGIV--LARTLTLGITKPLQTAVVVSRKVAEGD 233 DD+ + A +RI +V+ ++L L + A L I PL + ++A GD Sbjct: 178 DDSQQ------AYARIRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAGD 231 Query: 234 LATQVQVTSRDETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTE 293 L V++ RDE G LL+ L M +L V VR G+++I A+ +IAAGN DLS RTE Sbjct: 232 LTQPVRIDRRDEMGHLLEGLARMQAALTDTVRRVRHGSESIGAATKQIAAGNADLSQRTE 291 Query: 294 QQASSLEETASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINA 353 QASSLEETAS+MEE+ S VRQNADNARQASQLA SAS+VA QGG VV+ VV TM I+A Sbjct: 292 GQASSLEETASSMEEMTSIVRQNADNARQASQLADSASAVASQGGAVVTDVVATMREISA 351 Query: 354 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 413 SSR + +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKE Sbjct: 352 SSRTVSEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKE 411 Query: 414 IKELINDSVEKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLA 473 IKE+I S+ KV GS+L EQAG TM+ +V+S+R VTDI+ EI+AAS+EQ+SGIEQ+N A Sbjct: 412 IKEMIEASLAKVDTGSKLAEQAGSTMENIVTSIRRVTDIMGEIAAASSEQSSGIEQVNKA 471 Query: 474 ITQMDQVTQQN 484 +T MD+ TQQN Sbjct: 472 VTLMDEATQQN 482 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 332 bits (852), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 203/430 (47%), Positives = 280/430 (65%), Gaps = 14/430 (3%) Query: 65 AGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEE-KALFQKIGEQR 123 AGIR + + + A + A + K + + +Q E L P + +A F +I Sbjct: 70 AGIRWMMDQSNIGSGATVAELMQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTY 129 Query: 124 KVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMRE--MVDIQRKD-IDDTAK 180 +Y + ++++L AG + E F +YQ + M +Q+ D + D A Sbjct: 130 DIYHGALAELIQLLGAGKINE-------FFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAV 182 Query: 181 EIDNIAAQSRILIVVLEGLILLLGIVLART--LTLGITKPLQTAVVVSRKVAEGDLATQV 238 E DN ++ ++ + V++ LI +L +++A + L + P+ + R +A GDL ++ Sbjct: 183 E-DNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRI 241 Query: 239 QVTSRDETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQASS 298 V +E GQL ++L+ M L V +VR G + I + ++EIA GN DLS RTEQQA+S Sbjct: 242 DVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAAS 301 Query: 299 LEETASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRKI 358 LEETA++ME+L +TV+QNA+NARQAS LA SAS A++GG VV VV TM I +SS+KI Sbjct: 302 LEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKI 361 Query: 359 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELI 418 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIK LI Sbjct: 362 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLI 421 Query: 419 NDSVEKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQMD 478 DSV +V GS LVE AG TM E+V++V VTDI+ EI++AS EQ+ GI+Q+ LA+ +MD Sbjct: 422 EDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMD 481 Query: 479 QVTQQNAALV 488 +VTQQNA+LV Sbjct: 482 RVTQQNASLV 491