BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0033.p (696 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3708 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 348 2e-95 mll9517 [NT] COG0840 Methyl-accepting chemotaxis protein Mlo Mes... 271 6e-72 PA3707 [NT] COG0835 Chemotaxis signal transduction protein Pae P... 130 1e-29 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Bsu Bac... 99 4e-20 mll9516 [NT] COG0835 Chemotaxis signal transduction protein Mlo ... 96 2e-19 >PA3708 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 542 Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 209/397 (52%), Positives = 278/397 (70%), Gaps = 3/397 (0%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MKNWT++QRIL SF +I+ +M LMA + V + +EKGA ++DD+ PG+Y+ T + ++W Sbjct: 1 MKNWTVRQRILASFAVIIAIMLLMAATAYVKMLTVEKGAYRVQDDAMPGMYFITLVRSSW 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDA--DRKLFEQFK 118 +N L TQ++ I + +A+ + + ERLD+ Y KT+ D D +L F+ Sbjct: 61 TDNYLQTQELFGITDDHELSKAEADSILASEERLDQQIASYQKTMNPDEARDHELLAGFQ 120 Query: 119 ETRQKYRAVVSEVLKMDFSQR-APIDKIVNEQIRPQWRTGYQLTQRMVETNKGIADDAAQ 177 R+ Y +VL++ +R K+V + WR G + M+E NK IAD A+ Sbjct: 121 AVRKDYLEQHDKVLELYREKRFEEAGKLVAGPLTEHWREGRKYLNEMIELNKDIADRASD 180 Query: 178 RIGDAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVEL 237 I +AV+ A+ +++ L+ A++VA +CGF L+RAI +P+QK++ LD+M GD + R+ L Sbjct: 181 NIVNAVDDAELSMLVTLLLAVVVAGICGFLLLRAITQPIQKIVRSLDLMAGGDLTARLNL 240 Query: 238 DRKDEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTT 297 R+DEFG + GF+ M +EL LVSQAQ+SS +V TSVTEIAAT++QQQATA ETAATTT Sbjct: 241 GRRDEFGAIETGFNGMAEELKGLVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTT 300 Query: 298 EIGATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAAGSVSA 357 EIGATSREI ATSRDLVRTM+EVS +EQTS LAGSGQ GL RM +TM +VM AA V+A Sbjct: 301 EIGATSREIAATSRDLVRTMSEVSGAAEQTSTLAGSGQLGLARMEETMHHVMGAADLVNA 360 Query: 358 KLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEA 394 KLAILNEKAGNINQVVTTI KVADQTNLLSLNAAIEA Sbjct: 361 KLAILNEKAGNINQVVTTIVKVADQTNLLSLNAAIEA 397 >mll9517 [NT] COG0840 Methyl-accepting chemotaxis protein Mlo Mesorhizobium loti Length = 545 Score = 271 bits (692), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 190/402 (47%), Positives = 265/402 (65%), Gaps = 12/402 (2%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MK+ TI+ RIL SF +L++M+++A I+ + AT + P +Y+ST+I Sbjct: 1 MKSLTIRHRILVSFAAVLVVMSVIAVIAYAWFLQAGQEATEVEKGILPDVYHSTEIMIGQ 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDADRKLFEQFKET 120 + Q+ D N ++R + + N +++ R +DY+ TI SD D++ + KE Sbjct: 61 MTAHSLLQEYALQD-NPSDRSTLESAITTNRDQVQRSMDDYEATIVSDIDKQNYAVVKEL 119 Query: 121 RQKYRAVVSEVLKMDFSQRAPIDK--------IVNEQIRPQWRTGYQLTQRMVETNKGIA 172 ++R ++E +D S RA + K + + P + Q MV ++G A Sbjct: 120 ANQFR--LAETAVLDTS-RAALSKGETPNESPAIKNTVEPIFVKLQSALQAMVADHRGEA 176 Query: 173 DDAAQRIGDAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFS 232 + A QRI V +A+ L L+ AL +AL+ G+ L RAI PL +L+ + +MR GDFS Sbjct: 177 NSATQRISSIVRTAEVGLSVGLLIALGLALLLGYQLFRAITGPLTRLVAAVQLMRQGDFS 236 Query: 233 RRVELDRKDEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAET 292 R++L RKDEF VL +GF+ M D+LT L+ Q Q+SS +V TS+TEIAAT++QQQATA E Sbjct: 237 ERLDLRRKDEFSVLADGFNAMADDLTTLIGQVQRSSIQVGTSITEIAATSKQQQATATEI 296 Query: 293 AATTTEIGATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAA 352 AATTTEI AT++EI ATS +LVRTMNEVS V+EQT+A+AG GQAGLTRM +TMQ VM+AA Sbjct: 297 AATTTEIRATAKEISATSNELVRTMNEVSTVAEQTAAVAGGGQAGLTRMEETMQQVMEAA 356 Query: 353 GSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEA 394 G++++KLAIL+EKAG INQVVTTITKVADQTNLLSLNA+IEA Sbjct: 357 GAINSKLAILSEKAGTINQVVTTITKVADQTNLLSLNASIEA 398 >PA3707 [NT] COG0835 Chemotaxis signal transduction protein Pae Pseudomonas aeruginosa Length = 171 Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/151 (51%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 543 SQSLHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSML 602 + L LLF + +RYAL EV VLPL K +P AP WVAG+ H VPV+DL + Sbjct: 13 TSKLFLLFRMEGDRYALDAREVVEVLPLLRLKRIPEAPEWVAGVFSHRGVLVPVLDLCAM 72 Query: 603 ALGHPAPARVSTRLVLVHYRHAQAL-PVLLGLILPQATDTLRLDPAHFTPAAVRNEGAPY 661 A G A AR STR+VLV YR Q PV LGLIL QATDTLR +P+ F + N GA Y Sbjct: 73 AFGRAALARTSTRIVLVEYRARQDREPVWLGLILEQATDTLRCEPSAFRDYGLDNGGARY 132 Query: 662 LGPVMPYQGGLLQRVEVGDLLDPATRALLYP 692 LGPV GL+Q V V LL RALL+P Sbjct: 133 LGPVYEGPRGLVQWVRVEALLPDEVRALLFP 163 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Bsu Bacillus subtilis Length = 662 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 28/238 (11%) Query: 178 RIGDAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVEL 237 I DA S T M L+A+++ + F++R+I +PL++L+ + GD + +E+ Sbjct: 272 EIKDASKSVLTTGMIVLIASIVAGGILILFIVRSITKPLKRLVQSSKTISRGDLTETIEI 331 Query: 238 DRKDEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTT 297 KDE G LG F+ M L +L+S Q SV +AA++ Q A+A +T+ T Sbjct: 332 HSKDELGELGESFNEMGQSLRSLISAIQ-------NSVNNVAASSEQLTASAGQTSKATE 384 Query: 298 EIGAT-----------SREIHATSRDL----------VRTMNEVSVVSEQTSALAGSGQA 336 I SR++ ++S L +T ++++ S Q++ +AG+G+ Sbjct: 385 HITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVSQTSSDITKASIQSTEIAGTGEK 444 Query: 337 GLTRMGDTMQNVMDAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEA 394 + + G M ++ + A + L K+ +I ++ I +ADQTNLL+LNAAIEA Sbjct: 445 FVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITSILRVINGIADQTNLLALNAAIEA 502 >mll9516 [NT] COG0835 Chemotaxis signal transduction protein Mlo Mesorhizobium loti Length = 157 Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 80/145 (55%) Query: 546 LHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSMLALG 605 L L FS+G +RY + ++ VLP K LPGAP V GL+ + +P+ID+++LALG Sbjct: 4 LFLAFSMGPDRYLIDVHQIEEVLPYIDVKVLPGAPTGVLGLVSYNGIPIPLIDVTLLALG 63 Query: 606 HPAPARVSTRLVLVHYRHAQALPVLLGLILPQATDTLRLDPAHFTPAAVRNEGAPYLGPV 665 P+ +STR+V+ Y LLGLI + TDTL DPA F P + PYLGPV Sbjct: 64 RPSERLLSTRIVVTRYPAHDGEQRLLGLIAERVTDTLERDPAEFAPFGLEPGTPPYLGPV 123 Query: 666 MPYQGGLLQRVEVGDLLDPATRALL 690 ++Q V+V LL R L Sbjct: 124 ASDGSEIIQWVKVEALLSEEIRTAL 148