BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0032.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3706_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting p... 286 3e-77 RSp1647_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting ... 221 2e-57 mll9515_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting ... 210 3e-54 cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prote... 116 5e-26 ZcheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prot... 113 5e-25 >PA3706_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Pae Pseudomonas aeruginosa Length = 329 Score = 286 bits (733), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/278 (53%), Positives = 194/278 (69%), Gaps = 1/278 (0%) Query: 11 LKAVMGLDMATVGSSLIERVVRERMAALGIADDGHYLARLQGSAAELQALIELAVVPETW 70 LK+ +GLD ++VGS++IER VR+RM+ L + D+ Y RL GS E+QALIE VVPETW Sbjct: 9 LKSRIGLDASSVGSAVIERAVRQRMSGLALHDEDEYWMRLNGSPGEVQALIEAVVVPETW 68 Query: 71 FFRDREAIFAVARLARERLLS-QPDVPVRILSLPCSTGEEPYSVAMALLEAGVMPSQFVI 129 FFR E+ +ARLA ERL S +RILSLPCSTGEEPYS+ MALL+AG+ F + Sbjct: 69 FFRYPESFTTLARLAFERLPSLGGGRALRILSLPCSTGEEPYSIVMALLDAGLSEYLFEV 128 Query: 130 DAYDIRTRSLEIAAAGVYGRNSFRGQALGFRDRHFMTVEQGWQLEEAIRRQVRFAPGNLL 189 DA D+ R +E A+ GVYGRNSFRG LGFRDRHF V +G+QL E +RR+VRF GNLL Sbjct: 129 DALDVSARVIERASLGVYGRNSFRGDELGFRDRHFSEVAEGYQLAEQVRRKVRFRCGNLL 188 Query: 190 APDLLRQAAPYDFIFCRNVLIYFEREVQRQVVSLLESLMKPDAVIFVGPAEGGLMLSPRL 249 P LL APYDF+FCRN+LIYF+R Q +VV +L+ L++PD +F+GPAE L+ + Sbjct: 189 DPGLLAGEAPYDFVFCRNLLIYFDRPTQSEVVEVLKRLLRPDGAMFIGPAEASLLSQHGM 248 Query: 250 ESAGIALAFGFRKRVAVEKPAWRETVLAAAQPLLAAPV 287 + G+ L+F FR+ + A + V A+P++AA V Sbjct: 249 QPIGVPLSFVFRRTSEAPRGARPKAVSDGARPVVAAAV 286 >RSp1647_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Rso Ralstonia solanacearum Length = 255 Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 154/245 (62%), Gaps = 15/245 (6%) Query: 11 LKAVMGLDMATVGSSLIERVVRERMAALGIADDG-------------HYLARLQGSAAEL 57 L G+D ++G++ +ER V ER A+ +A+ Y RL E Sbjct: 12 LSLETGIDAPSLGANALERAVLERARAM-LAESSPRRPAVADAAALDAYWLRLNTWPEER 70 Query: 58 QALIELAVVPETWFFRDREAIFAVARLARERLLSQPDVPVRILSLPCSTGEEPYSVAMAL 117 QALIE VVPETWFFRDREA +ARLA ERL+ +P +RILS+ CSTGEEPYS AMAL Sbjct: 71 QALIEALVVPETWFFRDREAFAELARLAGERLVREPARVLRILSVACSTGEEPYSAAMAL 130 Query: 118 LEAGVMPSQFVIDAYDIRTRSLEIAAAGVYGRNSFRGQALGFRDRHFMTVEQGWQLEEAI 177 L+AG+ P++F IDA DI R+++ A +YGRN+FRG L FRDR+F V GWQL E + Sbjct: 131 LDAGIGPARFAIDAIDISGRAIDQAEHALYGRNAFRGYPLTFRDRYFSEVADGWQLNERV 190 Query: 178 RRQVRFAPGNLLAPDLLRQAAPYDFIFCRNVLIYFEREVQRQVVSLLESLMKPDAVIFVG 237 RR+VRF GNL + + A YDFIFCRN L YF R+ Q + L++ + VIFVG Sbjct: 191 RRRVRFTQGNLF-DETMDGEARYDFIFCRNALTYFHRDAQDHAIRRLDAQLADGGVIFVG 249 Query: 238 PAEGG 242 PAE G Sbjct: 250 PAETG 254 >mll9515_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Mlo Mesorhizobium loti Length = 320 Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/283 (42%), Positives = 162/283 (57%), Gaps = 19/283 (6%) Query: 11 LKAVMGLDMATVGSSLIERVVRERMAALGIADDGHYLARLQGSAAELQALIELAVVPETW 70 L +GLD +VG +++ + +++RMAA I + Y L GS+ ELQ LI V+PETW Sbjct: 9 LTETIGLDSTSVGPTVVRQAIKDRMAACRITNPQAYREHLTGSSQELQELINAVVIPETW 68 Query: 71 FFRDREAIFAVARLARERLLSQPDVPVRILSLPCSTGEEPYSVAMALLEAGVMPSQFVID 130 FFRDREA +AR AR +Q +++LSLPCSTGEE YSVAMA+ +AG +F ID Sbjct: 69 FFRDREAFTMLARHARVHKRAQS---IKVLSLPCSTGEEAYSVAMAMFDAGFEAHEFKID 125 Query: 131 AYDIRTRSLEIAAAGVYGRNSFRGQALGFRDRHFMTVEQGWQLEEAIRRQVRFAPGNLLA 190 D+ +R++ A +YGRNSFRG L F+DR+F E G + + +QVRF GNL Sbjct: 126 GVDVSSRNIATAERAIYGRNSFRGSHLEFKDRYFEAAEGGLRPIAGVLKQVRFRVGNLFG 185 Query: 191 PDLLRQAAPYDFIFCRNVLIYFEREVQRQVVSLLESLMKPDAVIFVGPAEGGLMLSPRLE 250 YD + CRN+LIYF RE+Q + + L+ L+ D ++ VGPAE L PRL Sbjct: 186 SRASFGQEVYDILLCRNLLIYFSRELQDRALICLKDLLAKDGLLLVGPAETAL---PRLH 242 Query: 251 S---AGIALAFGFRKRVAVEKPAWRETVLAAAQPLLAAPVPAR 290 A LAF F K V+ A P ++A +P R Sbjct: 243 GFIPADWPLAFAFLKSEPVKTTA----------PKVSAAIPVR 275 >cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Eco Escherichia coli K12 Length = 286 Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 118/235 (50%), Gaps = 14/235 (5%) Query: 26 LIERVVRERMAALGIADDGHYLARLQGS--AAELQALIELAVVPETWFFRDREAIFAVAR 83 + R+VR R+ +LG+ D GHYL L+ + + E QA I T FFR+ +A Sbjct: 50 VYNRLVR-RLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLAD 108 Query: 84 LARERLLSQPDVPVRILSLPCSTGEEPYSVAMALLEA-GVMPSQFVIDAYDIRTRSLEIA 142 AR R R+ S STGEEPYS+AM L + G P ++ + A DI T LE A Sbjct: 109 HARRR-----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 Query: 143 AAGVYGRNSFRGQALGFRDRHFMT----VEQGWQLEEAIRRQVRFAPGNLLAPDLLRQAA 198 +G+Y + R+FM E ++ + + V FAP NLLA Sbjct: 164 RSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYT-VPG 222 Query: 199 PYDFIFCRNVLIYFEREVQRQVVSLLESLMKPDAVIFVGPAEGGLMLSPRLESAG 253 P+D IFCRNV+IYF++ Q++++ L+KPD ++F G +E L R G Sbjct: 223 PFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRG 277 >ZcheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins EcZ Escherichia coli O157:H7 EDL933 Length = 286 Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 117/235 (49%), Gaps = 14/235 (5%) Query: 26 LIERVVRERMAALGIADDGHYLARLQGS--AAELQALIELAVVPETWFFRDREAIFAVAR 83 + R+VR R+ +LG+ D GHYL L+ + + E QA I T FFR+ +A Sbjct: 50 VYNRLVR-RLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLAD 108 Query: 84 LARERLLSQPDVPVRILSLPCSTGEEPYSVAMALLEA-GVMPSQFVIDAYDIRTRSLEIA 142 AR R R+ S STGEEPYS+AM L + G P ++ + A DI T LE A Sbjct: 109 HARRR-----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 Query: 143 AAGVYGRNSFRGQALGFRDRHFMT----VEQGWQLEEAIRRQVRFAPGNLLAPDLLRQAA 198 +G+Y + R+FM E ++ + + V FA NLLA Sbjct: 164 RSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFASLNLLAKQYT-VPG 222 Query: 199 PYDFIFCRNVLIYFEREVQRQVVSLLESLMKPDAVIFVGPAEGGLMLSPRLESAG 253 P+D IFCRNV+IYF++ Q++++ L+KPD ++F G +E L R G Sbjct: 223 PFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRG 277