BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0030.p         (643 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0107 [GEPR] COG0477 Permeases of the major facilitator superf...   159   2e-38
mll4118 [GEPR] COG0477 Permeases of the major facilitator superf...   125   3e-28
CAC2433 [O] COG0265 Trypsin-like serine proteases, typically per...   114   7e-25
AGl3235 [GEPR] COG0477 Permeases of the major facilitator superf...   110   1e-23
alr2758 [O] COG0265 Trypsin-like serine proteases, typically per...   105   2e-22

>RSp0107 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 432

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 89/111 (80%)

Query: 6   QSLANAVTPRFHYAWVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISVVISVN 65
           Q LA  + PRFHY W+ + V+FL+LLC+AG RATPSVM+LPLE EFGW+R TIS+ IS+ 
Sbjct: 2   QRLARLIAPRFHYGWIALAVVFLILLCAAGTRATPSVMMLPLEHEFGWSRGTISLAISIG 61

Query: 66  IALYGLIGPFSAAAMQRFGIRRVVLGALVLLASGTALSTLMHMPWHMLLSW 116
           IALYGL GPF+AA+MQ FGIR  VLGALV+L SGTALS +M  PW M+L W
Sbjct: 62  IALYGLTGPFAAASMQYFGIRPTVLGALVVLISGTALSAMMSQPWQMVLLW 112


>mll4118 [GEPR] COG0477 Permeases of the major facilitator superfamily Mlo
           Mesorhizobium loti
          Length = 446

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 80/107 (74%)

Query: 18  YAWVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISVVISVNIALYGLIGPFSA 77
           YA+VVVGVIFL LL +AG+R+ P+VM+LPLE  FGW R  IS+   V I LYGL GPF+A
Sbjct: 31  YAFVVVGVIFLCLLIAAGLRSAPAVMMLPLENSFGWRRDVISLAAGVGILLYGLTGPFAA 90

Query: 78  AAMQRFGIRRVVLGALVLLASGTALSTLMHMPWHMLLSWGLLVGAGT 124
           A M+R G+RR ++ +L++++  TALS LM  PWH+ ++WG+  G G+
Sbjct: 91  ALMERIGLRRTLIASLLVMSGSTALSLLMTKPWHLFITWGVFSGIGS 137


>CAC2433 [O] COG0265 Trypsin-like serine proteases, typically periplasmic,
           contain C-terminal PDZ domain Cac Clostridium
           acetobutylicum
          Length = 433

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 470 TERGSGTGFYIGSSGWLLTNQHVIGQARAVRVRLPTGRELLAEVVRVDAARDIALLKTEA 529
           T+ G G+G    + G++LTN HVI  A  + V L   +E+ A+VV  D A DIA++K   
Sbjct: 163 TQEGMGSGIIFNNDGYILTNYHVIKGADKIAVILNNKKEVSAKVVNYDEANDIAVIKMTG 222

Query: 530 PGVRPMPLRMGEP---GIGEDVYALGSPLGDAFNTTLTRGILSGV-RKV-----RDLDFL 580
               P    +G      +G+ V A+G+PLG  F  T+T G++S V R+V     +   ++
Sbjct: 223 SFTVPGVAELGSSASLNVGDSVVAIGNPLGKEFLGTVTTGVVSAVNREVAVSEGQKQTYI 282

Query: 581 QSDVAILPGSSGGPLLDKSGQVIGITVAGLGAKGLAGMNFFIPVGSAIERLQ 632
           Q+D AI PG+SGGPL++  GQV+GI  A +   G+ G+ F IP+ +   ++Q
Sbjct: 283 QTDAAINPGNSGGPLVNSFGQVVGINSAKISENGVEGIGFSIPIDTVKSKIQ 334


>AGl3235 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 433

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 1/125 (0%)

Query: 1   MNKLTQSLANAVTPR-FHYAWVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTIS 59
           MN L+  LA+ +  R  HY WVV    FL +L +AG   +  VMI PL QEFGW+ + IS
Sbjct: 1   MNMLSTRLASWMAGRNLHYGWVVAVTTFLTMLATAGAMGSAGVMIQPLHQEFGWDIADIS 60

Query: 60  VVISVNIALYGLIGPFSAAAMQRFGIRRVVLGALVLLASGTALSTLMHMPWHMLLSWGLL 119
             ++V + L+GL+GPF+AA M  FGIR+VV  AL L+  G   S  M   W +LL WG++
Sbjct: 61  SAMAVRLVLFGLLGPFAAAFMNHFGIRQVVSTALALIMGGIVASFFMTQVWQLLLLWGVV 120

Query: 120 VGAGT 124
           +G GT
Sbjct: 121 IGVGT 125


>alr2758 [O] COG0265 Trypsin-like serine proteases, typically periplasmic,
           contain C-terminal PDZ domain Nos Nostoc sp. PCC 7120
          Length = 407

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 14/166 (8%)

Query: 472 RGSGTGFYIGSSGWLLTNQHVIGQARAVRVRLPTGRELLAEVVRVDAARDIALLKTEAPG 531
           RG G+GF I  SG +LTN HV+ +A  V VRL  GR    +V  +D   D+A++K  A  
Sbjct: 124 RGLGSGFIIDKSGLILTNAHVVDKADRVTVRLKDGRSFDGKVQGIDEVTDLAVVKINAGN 183

Query: 532 VRPM-PL-RMGEPGIGEDVYALGSPLGDAFNTTLTRGILSGVRKV--------RDLDFLQ 581
             P+ PL       +G+   A+G+PLG  F+ T+T GI+S +++         + LDF+Q
Sbjct: 184 SLPVAPLGSSNNVQVGDWAIAVGNPLG--FDNTVTLGIVSTLKRSSAQVGITDKRLDFIQ 241

Query: 582 SDVAILPGSSGGPLLDKSGQVIGITVAGLGAKGLAGMNFFIPVGSA 627
           +D AI PG+SGGPLL+  G+VIGI  A + A  + G+ F IP+  A
Sbjct: 242 TDAAINPGNSGGPLLNDKGEVIGINTA-IRADAM-GIGFAIPIDKA 285