BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0020.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2526 [P] COG0605 Superoxide dismutase Rso Ralstonia solanacearum   237   7e-63
NMA1104 [P] COG0605 Superoxide dismutase NmA Neisseria meningiti...   221   5e-58
STM1431 [P] COG0605 Superoxide dismutase Sty Salmonella typhimur...   221   6e-58
NMB0884 [P] COG0605 Superoxide dismutase Nme Neisseria meningiti...   216   1e-56
PA4366 [P] COG0605 Superoxide dismutase Pae Pseudomonas aeruginosa    216   2e-56

>RSc2526 [P] COG0605 Superoxide dismutase Rso Ralstonia solanacearum
          Length = 192

 Score =  237 bits (605), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 127/158 (80%), Positives = 139/158 (87%), Gaps = 2/158 (1%)

Query: 1   MAHTLPALPYDLDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFEHLSLEEIIKKS 60
           MAHTLP LPY LDALAP ISKETLE+HYGKHHQTYVTNLNNLIPGTEFE+LSLE+I+KKS
Sbjct: 1   MAHTLPPLPYALDALAPHISKETLEFHYGKHHQTYVTNLNNLIPGTEFENLSLEDIVKKS 60

Query: 61  SGGIFNNAAQVWNHTFYWNGLTPKGQGAPSGALADAINAKWGSFDAFKAEFTKQGLANFG 120
           SGG+FNNAAQVWNHTFYWNGL P G GAP+GALADAINAKWGSFD FK EFTK  +  FG
Sbjct: 61  SGGLFNNAAQVWNHTFYWNGLKPNGGGAPAGALADAINAKWGSFDKFKEEFTKVAIGTFG 120

Query: 121 SGWTWLVKKADGSLDIVNTT--PQNVTTDSKPLLTVDV 156
           SGW WLVKKADGSLD+V+T+     +TTD+KPLLT DV
Sbjct: 121 SGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDV 158


>NMA1104 [P] COG0605 Superoxide dismutase NmA Neisseria meningitidis Z2491
          Length = 195

 Score =  221 bits (563), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 124/158 (78%), Gaps = 2/158 (1%)

Query: 1   MAHTLPALPYDLDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFEHLSLEEIIKKS 60
           M H LP LPY+LDAL+P +SKETLE+HYGKHHQTY+TNLNN I GTEFE+L LEEI+KKS
Sbjct: 1   MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKS 60

Query: 61  SGGIFNNAAQVWNHTFYWNGLTPKGQGAPSGALADAINAKWGSFDAFKAEFTKQGLANFG 120
           SGG+FNNAAQ WNHTFYW G TPKGQG PSG LA AI+AKWGSF+ F+  F+      FG
Sbjct: 61  SGGVFNNAAQTWNHTFYWLGFTPKGQGKPSGELAAAIDAKWGSFEKFQEAFSACAAGTFG 120

Query: 121 SGWTWLVKKADGSLDIVNTT--PQNVTTDSKPLLTVDV 156
           SGW WLVK   G LD+V+T+     +TT++ PLLT DV
Sbjct: 121 SGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDV 158


>STM1431 [P] COG0605 Superoxide dismutase Sty Salmonella typhimurium LT2
          Length = 193

 Score =  221 bits (562), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 122/158 (77%), Gaps = 2/158 (1%)

Query: 1   MAHTLPALPYDLDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFEHLSLEEIIKKS 60
           M+  LPALPY  DALAP IS ETLEYHYGKHHQTYVTNLNNLI GT FE  SLEEI++ S
Sbjct: 1   MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRTS 60

Query: 61  SGGIFNNAAQVWNHTFYWNGLTPKGQGAPSGALADAINAKWGSFDAFKAEFTKQGLANFG 120
            GGIFNNAAQVWNHTFYWN L P   G P+G LADAI A +GSF  FKA+FT   + NFG
Sbjct: 61  EGGIFNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFG 120

Query: 121 SGWTWLVKKADGSLDIVNTTPQN--VTTDSKPLLTVDV 156
           SGWTWLVK ADG L IV+T+     +TTD+ PLLTVDV
Sbjct: 121 SGWTWLVKSADGKLAIVSTSNAGTPLTTDATPLLTVDV 158


>NMB0884 [P] COG0605 Superoxide dismutase Nme Neisseria meningitidis MC58
          Length = 195

 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 122/158 (77%), Gaps = 2/158 (1%)

Query: 1   MAHTLPALPYDLDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFEHLSLEEIIKKS 60
           M H LP LPY+LDAL+P +SKETLE+HYGKHHQTY+TNLNN I GTEFE+L LEEI+KKS
Sbjct: 1   MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKS 60

Query: 61  SGGIFNNAAQVWNHTFYWNGLTPKGQGAPSGALADAINAKWGSFDAFKAEFTKQGLANFG 120
           SGG+FNNAAQ WNHTFYW G T KGQG P+G LA AI+AKWGSF+ F+  F       FG
Sbjct: 61  SGGVFNNAAQTWNHTFYWLGFTSKGQGKPAGELAAAIDAKWGSFEKFQEAFNACAAGTFG 120

Query: 121 SGWTWLVKKADGSLDIVNTT--PQNVTTDSKPLLTVDV 156
           SGW WLVK   G LD+V+T+     +TT++ PLLT DV
Sbjct: 121 SGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDV 158


>PA4366 [P] COG0605 Superoxide dismutase Pae Pseudomonas aeruginosa
          Length = 193

 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 121/158 (76%), Gaps = 2/158 (1%)

Query: 1   MAHTLPALPYDLDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFEHLSLEEIIKKS 60
           MA  LP LPY+ +AL P IS ETLEYH+ KHH TYV NLNNLIPGTEFE  SLEEI+K S
Sbjct: 1   MAFELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEFEGKSLEEIVKSS 60

Query: 61  SGGIFNNAAQVWNHTFYWNGLTPKGQGAPSGALADAINAKWGSFDAFKAEFTKQGLANFG 120
           SGGIFNNAAQVWNHTFYWN L+P G G P+GALADAINA +GSFD FK EFTK  +  FG
Sbjct: 61  SGGIFNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFG 120

Query: 121 SGWTWLVKKADGSLDIVNTTPQN--VTTDSKPLLTVDV 156
           SGW WLVKKADGSL + +T      +T+   PLLT DV
Sbjct: 121 SGWGWLVKKADGSLALASTIGAGNPLTSGDTPLLTCDV 158