BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0016.p (201 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2528 [U] COG0811 Biopolymer transport proteins Rso Ralstonia ... 242 4e-64 PA2983 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas... 178 6e-45 XF1079 [U] COG0811 Biopolymer transport proteins Xfa Xylella fas... 158 7e-39 FN1834 [U] COG0811 Biopolymer transport proteins Fnu Fusobacteri... 92 1e-18 MTH1022 [U] COG0811 Biopolymer transport proteins Mth Methanothe... 74 3e-13 >RSc2528 [U] COG0811 Biopolymer transport proteins Rso Ralstonia solanacearum Length = 206 Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 118/205 (57%), Positives = 150/205 (73%), Gaps = 4/205 (1%) Query: 1 LLAIILAAGWPIWPLLIASIIGLALVIERLAYLRRARILPPDLLGEVVRVYQSGRVNEDV 60 + +II AAGWPIWPLLIAS++ LAL+IER L+R +I+PP + E + V + +V Sbjct: 1 MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEV 60 Query: 61 IDKLEQNSPLGQVLAAGLRNV----DAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASL 116 ++ LEQ SPLG+VLAA LR+V RE KE +EEAGQ AHRLER+L LGTIAS+ Sbjct: 61 VNTLEQGSPLGRVLAAALRHVVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASV 120 Query: 117 APLMGLFGTVVGMIEIFASQNAAGTNPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRA 176 APLMGLFGTVVGMIEIF SQ AAGTNP LAHGIS+ALYNT GL +A+P L+F+R+FR Sbjct: 121 APLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYNTALGLVVAIPTLIFWRYFRG 180 Query: 177 QVDGFVVDMEQQAVKFVDIVHDVRR 201 VD +VV++E + ++D + RR Sbjct: 181 VVDSYVVELEHLSATYLDAILPPRR 205 >PA2983 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas aeruginosa Length = 211 Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 92/200 (46%), Positives = 132/200 (66%), Gaps = 3/200 (1%) Query: 4 IILAAGWPIWPLLIASIIGLALVIERLAYLRRARILPPDLLGEVVRVYQSGRVNEDVIDK 63 ++ A GW + P++++SI A+V ERL LR++R+ PP+LLG+V + + +++ + Sbjct: 4 LVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKD 63 Query: 64 LEQNSPLGQVLAAGLRNVDAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLF 123 L NSPLG++LAAGL N RE+MKE IEEA H LER+L LGTIA++APL+GL Sbjct: 64 LRANSPLGEILAAGLANSKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLL 123 Query: 124 GTVVGMIEIFAS--QNAAGTNPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRAQVDGF 181 GTV GMI+IF + N +P LA GIS AL T GL +A+PA+ F+R+ +VD Sbjct: 124 GTVFGMIQIFGAFMDNGMANSP-MLAAGISKALITTAAGLLVAIPAVFFHRYLLRRVDEL 182 Query: 182 VVDMEQQAVKFVDIVHDVRR 201 V+ MEQ+A+K V++V R Sbjct: 183 VIAMEQEAIKLVEVVQGDRE 202 >XF1079 [U] COG0811 Biopolymer transport proteins Xfa Xylella fastidiosa 9a5c Length = 220 Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 132/197 (67%), Gaps = 1/197 (0%) Query: 1 LLAIILAAGWPIWPLLIASIIGLALVIERLAYLRRARILPPDLLGEVVRVYQSGRVNEDV 60 +L ++ A GWP+ PLL+ ++ LA+V+ERL LRR +LP L EV + G+++++ Sbjct: 1 MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNH 60 Query: 61 IDKLEQNSPLGQVLAAGLRNVDAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASLAPLM 120 ++ L +NSPLG +LAA L RE+++E IE+ G+ HR+ERFL LGTIAS PL+ Sbjct: 61 LESLRRNSPLGALLAAALDVKGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLL 120 Query: 121 GLFGTVVGMIEIFASQNAAGTNPA-QLAHGISIALYNTGFGLAIAMPALVFYRHFRAQVD 179 GL GTVVGMI++F G QLA GI AL T G+ IA+PAL+F+R+F+ ++ Sbjct: 121 GLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTATGMIIAIPALIFHRYFKGRIT 180 Query: 180 GFVVDMEQQAVKFVDIV 196 G+V++MEQ+A+ +D + Sbjct: 181 GYVIEMEQEAMLLLDAI 197 >FN1834 [U] COG0811 Biopolymer transport proteins Fnu Fusobacterium nucleatum Length = 187 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 20 IIGLALVIERLAY-LRRARILPPDLLGEVVRVYQSGRVNEDVI----DKLEQNSPLGQVL 74 IIGL V+ER +Y L + + L +V ++ G++ E ++ +K + L ++L Sbjct: 3 IIGLYAVLERFSYFLIKEKNNFSKLPSDVRQLINEGKIKEAIVALNSNKSSTSVVLKEIL 62 Query: 75 AAGLRNVDAPREVMKEAIEEAGQAAA----HRLERFLTTLGTIASLAPLMGLFGTVVGMI 130 G + +E + A+EE G+ A LER + L A+ +PL+GL GTV GMI Sbjct: 63 IYGYK---ENKETL-SALEEKGKEKAIERIKSLERNMWLLSLAANASPLLGLLGTVTGMI 118 Query: 131 EIFASQNAAGTNPAQ-LAHGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDMEQQA 189 + F S GT A LA GIS ALY T GL +A+P ++FY +F ++D V D+E+ Sbjct: 119 KAFNSIALNGTGDAGVLAKGISEALYTTAGGLIVAIPCMIFYNYFNKKIDLIVSDIEKTC 178 Query: 190 VKFVD 194 + ++ Sbjct: 179 TELLN 183 >MTH1022 [U] COG0811 Biopolymer transport proteins Mth Methanothermobacter thermautotrophicus Length = 279 Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 20 IIGLALVIERLAYLRR-ARILPPDLLGEVVRVYQSGRVNEDVIDKLEQNSPLGQVLAAGL 78 I G +E++ YLR+ +R+ P ++G V + G E + + + +P+ ++++ L Sbjct: 32 IYGFITALEKIHYLRKISRVSTPQIIGAVNESMEKGGALEALREIGQYQNPVSKIISEAL 91 Query: 79 RNVDAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNA 138 + R +++A+E + R L TL TI +AP++GL GTV+G I+ + A Sbjct: 92 KIGYRNRSEVEDAMERVFIVEMSNMTRGLGTLRTIIEVAPMLGLIGTVIG---IWYTFRA 148 Query: 139 AGTN--PAQLAHGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDME 186 G N PA +A GI +AL T GLA+A+ + Y + ++D + +E Sbjct: 149 LGVNADPAAMAEGIYVALITTILGLAVAIILMPLYSYITGRIDDEIDKIE 198