BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0175.p         (227 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM4516 [S] COG2733 Predicted membrane protein Sty Salmonella ty...   190   2e-48
yjiN [S] COG2733 Predicted membrane protein Eco Escherichia coli...   190   2e-48
ZyjiN [S] COG2733 Predicted membrane protein EcZ Escherichia col...   186   4e-47
ECs5299 [S] COG2733 Predicted membrane protein Ecs Escherichia c...   186   4e-47
mll1146 Non COG                                                       109   5e-24

>STM4516 [S] COG2733 Predicted membrane protein Sty Salmonella typhimurium
           LT2
          Length = 423

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 132/183 (72%)

Query: 1   MDKQQALRRTKRLALGCLLGSAALFVAASLAAPSTWSALLRAMAEAAMVGALADWFAVTA 60
           M+K   L+R KRLAL  LL +AA FV      PS W    +A+AEAAMVGALADWFAV A
Sbjct: 1   MNKIAELKRAKRLALSLLLIAAATFVTTLFLPPSFWVLGAKAIAEAAMVGALADWFAVVA 60

Query: 61  LFRRVPLPFLARHTAIIPRNKDRIADNLAVFVEEKFLSPQSLAGLVRRHDPAQRLSAWMA 120
           LFRR+P+PF++RHTAIIPRNKDRI +NL  FV+EKFL  QSL  L+RRH+PA  +  W +
Sbjct: 61  LFRRIPIPFISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSLIALIRRHEPALLIGNWFS 120

Query: 121 APENAARLGGYMVQAVGGVLTLTDDRRIQAFVREALQTALGKLDLSRSLASILDTLTLDG 180
            P+NA+R+G +++Q + G L LTDD RIQ  ++ A+  A+ K+DLS + A +L+++T + 
Sbjct: 121 QPDNASRVGQHLLQIMSGFLELTDDARIQRLLKRAVHKAIDKVDLSGTSALMLESMTKND 180

Query: 181 RHH 183
           RH 
Sbjct: 181 RHQ 183


>yjiN [S] COG2733 Predicted membrane protein Eco Escherichia coli K12
          Length = 426

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/183 (54%), Positives = 132/183 (72%)

Query: 1   MDKQQALRRTKRLALGCLLGSAALFVAASLAAPSTWSALLRAMAEAAMVGALADWFAVTA 60
           M+K   LRR KRLAL  LL +AA FV      P+ W + ++A+AEAAMVGALADWFAV A
Sbjct: 1   MNKLIELRRAKRLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVA 60

Query: 61  LFRRVPLPFLARHTAIIPRNKDRIADNLAVFVEEKFLSPQSLAGLVRRHDPAQRLSAWMA 120
           LFRRVP+P ++RHTAIIPRNKDRI +NL  FV+EKFL  QSL  L+RRH+PA  +  W +
Sbjct: 61  LFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFS 120

Query: 121 APENAARLGGYMVQAVGGVLTLTDDRRIQAFVREALQTALGKLDLSRSLASILDTLTLDG 180
            PENA R+G +++Q + G L LTDD RIQ  ++ A+  A+ K+DLS + A +L+++T + 
Sbjct: 121 QPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKND 180

Query: 181 RHH 183
           RH 
Sbjct: 181 RHQ 183


>ZyjiN [S] COG2733 Predicted membrane protein EcZ Escherichia coli O157:H7
           EDL933
          Length = 423

 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/183 (53%), Positives = 131/183 (71%)

Query: 1   MDKQQALRRTKRLALGCLLGSAALFVAASLAAPSTWSALLRAMAEAAMVGALADWFAVTA 60
           M+K   LRR K LAL  LL +AA FV      P+ W + ++A+AEAAMVGALADWFAV A
Sbjct: 1   MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVA 60

Query: 61  LFRRVPLPFLARHTAIIPRNKDRIADNLAVFVEEKFLSPQSLAGLVRRHDPAQRLSAWMA 120
           LFRRVP+P ++RHTAIIPRNKDRI +NL  FV++KFL  QSL  L+RRH+PA  +  W +
Sbjct: 61  LFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQKKFLDTQSLVALIRRHEPALLIGNWFS 120

Query: 121 APENAARLGGYMVQAVGGVLTLTDDRRIQAFVREALQTALGKLDLSRSLASILDTLTLDG 180
            PENA R+G +++Q + G L LTDD RIQ  ++ A+  A+ K+DLS + A +L+++T + 
Sbjct: 121 QPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKND 180

Query: 181 RHH 183
           RH 
Sbjct: 181 RHQ 183


>ECs5299 [S] COG2733 Predicted membrane protein Ecs Escherichia coli O157:H7
          Length = 423

 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/183 (53%), Positives = 131/183 (71%)

Query: 1   MDKQQALRRTKRLALGCLLGSAALFVAASLAAPSTWSALLRAMAEAAMVGALADWFAVTA 60
           M+K   LRR K LAL  LL +AA FV      P+ W + ++A+AEAAMVGALADWFAV A
Sbjct: 1   MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVA 60

Query: 61  LFRRVPLPFLARHTAIIPRNKDRIADNLAVFVEEKFLSPQSLAGLVRRHDPAQRLSAWMA 120
           LFRRVP+P ++RHTAIIPRNKDRI +NL  FV++KFL  QSL  L+RRH+PA  +  W +
Sbjct: 61  LFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQKKFLDTQSLVALIRRHEPALLIGNWFS 120

Query: 121 APENAARLGGYMVQAVGGVLTLTDDRRIQAFVREALQTALGKLDLSRSLASILDTLTLDG 180
            PENA R+G +++Q + G L LTDD RIQ  ++ A+  A+ K+DLS + A +L+++T + 
Sbjct: 121 QPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKND 180

Query: 181 RHH 183
           RH 
Sbjct: 181 RHQ 183


>mll1146 Non COG
          Length = 431

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 2/183 (1%)

Query: 3   KQQALRRTKRLALGCLLGSAALF-VAASLAAPSTWSALLRAMAEAAMVGALADWFAVTAL 61
           K  ALRRTK +A   L     +F +A S      W   + A AEAA +G LADW+AV AL
Sbjct: 20  KLSALRRTKFIATAALGLCVLVFALAKSFENSHPWLGFVSAFAEAATIGGLADWYAVVAL 79

Query: 62  FRRVPLPFLARHTAIIPRNKDRIADNLAVFVEEKFLSPQSLAGLVRRHDPAQRLSAWMAA 121
           FRR PL     HTAIIP N++RIADNL  F+E  FL+P+ +   +   D A  ++ W+  
Sbjct: 80  FRR-PLGLPIPHTAIIPENQNRIADNLGRFIEANFLAPEPVREKLAEVDFAVLVADWLTD 138

Query: 122 PENAARLGGYMVQAVGGVLTLTDDRRIQAFVREALQTALGKLDLSRSLASILDTLTLDGR 181
            E AA L  ++V+ V   L   +   ++ FV   +   + K+ L+   A +L  LT D R
Sbjct: 139 AERAAGLSRFVVRLVPQTLAAVEQSGLRGFVTSRMLEQIEKVPLAPLAAELLSALTDDRR 198

Query: 182 HHN 184
           H  
Sbjct: 199 HQK 201