BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0170.p (567 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti 234 4e-61 RSc1545 [T] COG5001 Predicted signal transduction protein contai... 226 1e-58 sll0267_6 [T] COG2200 FOG Syn Synechocystis 226 2e-58 RSp0254_4 [T] COG2200 FOG Rso Ralstonia solanacearum 218 3e-56 PA4601_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 215 2e-55 >SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 257 Score = 234 bits (597), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 173/251 (68%), Gaps = 2/251 (0%) Query: 316 ELRTAVAQHQFVVHYQPQVTFE-GKVVGAEALVRWKHPMKGMVPPALFIPVAEELGLMEE 374 ELR A+A+ +F++H+QPQ++ E G++ AEAL+RW+HP++G++ PA FIP+AEE GL+ Sbjct: 8 ELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAFIPLAEETGLIVP 67 Query: 375 IGHQVLEAICRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRISSKAVK 434 IG VL CR L++WQ GL L+V+VNVSA++F+ ++ AR + + + ++ ++ Sbjct: 68 IGDWVLRTACRQLKAWQDAGLP-PLIVSVNVSARQFRERNWAARVAAVLEETCLEARYLE 126 Query: 435 VELTESMMIDKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSFVR 494 +ELTES+++ + I M+ L++ V +++DDFGTGYSSLS L RFP+ +LKID+SFV Sbjct: 127 LELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRRLKIDRSFVT 186 Query: 495 RMQDDAATASIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMPGE 554 + DA +I +II L Q LGL +IAEGVET Q + L GC QGY++ +P+PGE Sbjct: 187 DIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGYFFSQPLPGE 246 Query: 555 QFTALLEGRQR 565 F LL +R Sbjct: 247 DFEVLLSSERR 257 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 226 bits (575), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 158/446 (35%), Positives = 239/446 (53%), Gaps = 21/446 (4%) Query: 115 WVIIDVSERLEAESRIDRLAFYDPVTDLPNKKLFLDRLRRGLGRQQAHGLPLVVFYMEMH 174 W + V++ +EAE+RI +LA YD +T L N+ F ++L L +A L + Y+++ Sbjct: 325 WAL--VTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLAAPEAR---LGLLYIDLD 379 Query: 175 RADLSHGLVKADDADRLFKECARRLGA-CVAADQTLARLDGERFALGCDLPVSELAEGIR 233 L + D L + A+RL A C +ARL G+ FA+ ++ A Sbjct: 380 GFKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAA--- 436 Query: 234 FCETLAHRLIAALAEPQ--GSTVSFPYSLNIGINILRGDVQSAEEAVMQAKLAMVQSLAA 291 TLA LI AL P G+ + +IGI + + E + +A +A+ + AA Sbjct: 437 ---TLATALIEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAA 493 Query: 292 GRNVFRFFDPAMQALASQRSALEVELRTAVA-QHQFVVHYQPQVTF-EGKVVGAEALVRW 349 G+ + R F M+ R+ LE +LR A+ Q + V YQP V GKV EALVRW Sbjct: 494 GKGLARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRW 553 Query: 350 KHPMKGMVPPALFIPVAEELGLMEEIGHQVLEAICRDLESWQREGLARELVVAVNVSAQE 409 H +G VPP F+P+AE+ GL++++G VL CR+ W E AR VAVNVS + Sbjct: 554 HHAERGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRW--EDGAR---VAVNVSPMQ 608 Query: 410 FKVDHFVARFHETIRQHRISSKAVKVELTESMMIDKIDEVIEKMNDLKSHEVSISLDDFG 469 H + ++ +++E+TE+ +I E E + L V ++LDDFG Sbjct: 609 LGKATLAQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFG 668 Query: 470 TGYSSLSYLGRFPIDQLKIDQSFVRRMQDDAATASIIRSIIMLGQSLGLSIIAEGVETME 529 TGYSSL++L FP D++KID+SFVR + + +A ++R+I LG+ LG++ +AEGVET Sbjct: 669 TGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQA 728 Query: 530 QRDLLHAQGCTLYQGYWYGRPMPGEQ 555 + GCT QGY+YGRP P ++ Sbjct: 729 HVRGIREAGCTEAQGYYYGRPAPSDE 754 >sll0267_6 [T] COG2200 FOG Syn Synechocystis Length = 253 Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 163/247 (65%), Gaps = 2/247 (0%) Query: 310 RSALEVELRTAVAQHQFVVHYQPQVTFEGKVVGAEALVRWKHPMKGMVPPALFIPVAEEL 369 R ALE +LR+A+ Q QF V+ QPQV G +GAEAL+RW HP +G +PP +FIP+AEE+ Sbjct: 2 RFALEADLRSALEQKQFQVYLQPQVDSHGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEI 61 Query: 370 GLMEEIGHQVLEAICRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRIS 429 GL+ IG VLE +C+ L Q+ GL L +A+NVS ++F+ +F + + Sbjct: 62 GLIGGIGDFVLEQVCQYLARLQQLGLT--LRIAINVSPRQFRQANFAKEIKNLLACTGVD 119 Query: 430 SKAVKVELTESMMIDKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKID 489 + +E+TE ++++ + I M +L++ + S+DDFGTGYSSLSYL R P+++LKID Sbjct: 120 PYRLTLEVTEGLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKID 179 Query: 490 QSFVRRMQDDAATASIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGR 549 ++FV+ D A+++ +II + ++ L+I+AEGVET EQ L GC YQGY+YGR Sbjct: 180 RAFVQDAPQDLNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYFYGR 239 Query: 550 PMPGEQF 556 PMP ++F Sbjct: 240 PMPIDEF 246 >RSp0254_4 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 261 Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/253 (43%), Positives = 162/253 (64%), Gaps = 1/253 (0%) Query: 310 RSALEVELRTAVAQHQFVVHYQPQV-TFEGKVVGAEALVRWKHPMKGMVPPALFIPVAEE 368 R LE ++R A+ Q QF + YQPQ+ T G++ G EAL+RW HP +G++PPA FIPVAEE Sbjct: 2 RLNLEHQIRAALEQGQFRLLYQPQIDTKTGRICGLEALIRWIHPTRGLLPPAAFIPVAEE 61 Query: 369 LGLMEEIGHQVLEAICRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRI 428 GL+ EIG+ VL + +W GL +L +AVNVS +FK + RQH + Sbjct: 62 SGLVVEIGNWVLAEAAQQRAAWHARGLGEDLTIAVNVSPLQFKRGTVLPTLLRLQRQHGL 121 Query: 429 SSKAVKVELTESMMIDKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKI 488 S +++E+TESM+++ + IE + ++ V I++DDFGTGYSSL+YL R PID +KI Sbjct: 122 GSGFLELEVTESMLMEGTERTIEDLTAIRQLGVRIAIDDFGTGYSSLAYLKRLPIDLIKI 181 Query: 489 DQSFVRRMQDDAATASIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYG 548 D++FV+ + D+ A+I ++++L +LG+ + AEGVE Q L + C + QGY++ Sbjct: 182 DRAFVKDIDRDSNDAAICTTVVVLAHNLGVKVCAEGVEDAAQSAFLASHQCDVLQGYYFS 241 Query: 549 RPMPGEQFTALLE 561 P+ E TALLE Sbjct: 242 EPLLPEAVTALLE 254 >PA4601_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 247 Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 108/236 (45%), Positives = 156/236 (66%), Gaps = 2/236 (0%) Query: 325 QFVVHYQPQVTFEGK-VVGAEALVRWKHPMKGMVPPALFIPVAEELGLMEEIGHQVLEAI 383 +FV+HYQPQ T +G+ + GAEAL+RW+HP +G+VPP+ FIPV EE+GL+ ++G +L Sbjct: 1 EFVLHYQPQFTGDGRRLTGAEALLRWQHPRRGLVPPSEFIPVLEEIGLVAQVGDWLLAEA 60 Query: 384 CRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRISSKAVKVELTESMMI 443 C+ L SW + + R V+VN+SA++F R + + I +++ELTES+++ Sbjct: 61 CKQLRSWHKAKV-RVPKVSVNLSARQFADGQLGERIAAILYETGIPPACLELELTESILM 119 Query: 444 DKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSFVRRMQDDAATA 503 + E ++ ++ LK ++I++DDFGTGYSSL+YL +FPID LKID+SFV + A Sbjct: 120 SDVAEAMQILSGLKRLGLAIAVDDFGTGYSSLNYLKQFPIDVLKIDRSFVDGLPHGEQDA 179 Query: 504 SIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMPGEQFTAL 559 I R+II + SL L +IAEGVE+ Q D L GC QGY +GRPMP EQF L Sbjct: 180 QIARAIIAMAHSLNLMVIAEGVESQAQLDFLREHGCDEVQGYLFGRPMPAEQFGML 235