BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0165.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4661 Non COG                                                         67   2e-11
RSp1201 Non COG                                                        64   1e-10

>PA4661 Non COG
          Length = 173

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 37  TGNNTQLARIGAQFNWGPDWNFWQSNGTHVGGYWDLSLANWRMNHYNNTNDSGNLIDLGL 96
           TG +    R+G  ++W   W  WQ++   + GYWD     W        ++      L  
Sbjct: 33  TGQSGMTYRLGLSWDWDKSW--WQTSTGRLTGYWDAGYTYWE-----GGDEGAGKHSLSF 85

Query: 97  TPVL--RFQRDDGKGFYGEAGIGVHLFSKLYRNNDKVLSTAFQFGDHIGAGYVFSNGLDL 154
            PV    F  D  K F  EAGIGV  FS   R  D+ L ++  F D IGAG  F+NG  +
Sbjct: 86  APVFVYEFAGDSIKPFI-EAGIGVAAFSGT-RVGDQNLGSSLNFEDRIGAGLKFANGQSV 143

Query: 155 GIRLQHFSNGGIXR 168
           G+R  H+SN G+ +
Sbjct: 144 GVRAIHYSNAGLKQ 157


>RSp1201 Non COG
          Length = 187

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 35  YGTGNNTQLARIGAQFNWGPDWNFWQSNGTHVGGYWDLSLANWRMNHYNNTNDSGNLIDL 94
           YG  N   + + G   ++   ++     G  +   W+++L  WR     N     NL + 
Sbjct: 38  YGRDNRHGIEKYGVDIDFDSGFHCGNPQGWFLNLDWEIALGQWRSTKGTNRQ---NLTEF 94

Query: 95  GLTPVLRFQRDDGKGF-YGEAGIGVHLFSKLYRNNDKVLSTAFQFGDHIGAGYVF--SNG 151
           G+TP+ R ++  G    + EAGIG  L S    +++   STAFQF D IG G  F     
Sbjct: 95  GVTPLFRLEKRGGSWVPFIEAGIGPRLLSHTRTSDEHNFSTAFQFSDMIGVGVAFGSRQQ 154

Query: 152 LDLGIRLQHFSNGGIXR 168
             +G R +H SN  I R
Sbjct: 155 FQVGYRFEHLSNASIKR 171