BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0158.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl381 [E] COG1126 ABC-type polar amino acid transport system, A... 314 1e-85 AGc2580 [E] COG1126 ABC-type polar amino acid transport system, ... 306 3e-83 AGpA331 [E] COG1126 ABC-type polar amino acid transport system, ... 295 8e-80 SMa0508 [E] COG1126 ABC-type polar amino acid transport system, ... 286 3e-77 AGc2571 [E] COG1126 ABC-type polar amino acid transport system, ... 281 1e-75 >AGl381 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/240 (63%), Positives = 192/240 (80%), Gaps = 1/240 (0%) Query: 5 VKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIHVC 64 V + ++HKSFG+ +VL GVSL V +G++ A+IG+SGSGKSTLLRC+NGLEK++ G I + Sbjct: 4 VIVENVHKSFGALEVLKGVSLTVGRGEVFALIGRSGSGKSTLLRCMNGLEKINSGRIEIA 63 Query: 65 GHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAHKV 124 GH + D LR+LR VGIVFQSYNLFPHLTV NI LA +K ++ E K IA +V Sbjct: 64 GHALGG-DATALRKLRTDVGIVFQSYNLFPHLTVGENIMLAPRIVKDVAKSETKDIAREV 122 Query: 125 LQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVME 184 LQLVGL K ++YP+QLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELT EVL VME Sbjct: 123 LQLVGLSEKFDSYPDQLSGGQQQRVAIARSLAMRPKVMLFDEVTSALDPELTEEVLTVME 182 Query: 185 DLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFVSSDL 244 +LA+GGMTM+LVTHEMAFAR++A +FMH+G++WE G ELF+NP+T EL++FV +D+ Sbjct: 183 NLAKGGMTMILVTHEMAFARRVATETIFMHKGKIWEQGRSAELFANPQTPELRQFVKADV 242 >AGc2580 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 150/240 (62%), Positives = 186/240 (77%), Gaps = 1/240 (0%) Query: 3 AIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIH 62 ++V I+ +HK +G+ +VL GVSL+VE GQ+VAIIG+SGSGKST+LRC+NGLE+ GNI Sbjct: 2 SVVTIDQVHKRYGALEVLKGVSLNVEAGQVVAIIGRSGSGKSTMLRCINGLEEFQSGNIT 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAH 122 GH + D+ LR+LRK VGIVFQSYNLFPHLTV NI L+ + ++ +A +A Sbjct: 62 AAGHRVEQ-DQTKLRQLRKDVGIVFQSYNLFPHLTVGENIMLSPKITQDVARADADVLAR 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 KVL VGL K +AYP+ LSGGQ QRVAIARSLAM P++MLFDEVTSALDPELT EVL V Sbjct: 121 KVLAQVGLAEKFDAYPDMLSGGQQQRVAIARSLAMRPKVMLFDEVTSALDPELTGEVLLV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFVSS 242 ME LAR GMTM+LVTHEM+FAR +A V VFMHQG++WE+G +LF P+T ELQ F+S+ Sbjct: 181 MEQLAREGMTMLLVTHEMSFARSVAHVTVFMHQGKIWEMGASKQLFEKPQTPELQAFLSN 240 >AGpA331 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 295 bits (754), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 143/238 (60%), Positives = 187/238 (78%), Gaps = 1/238 (0%) Query: 3 AIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIH 62 A+V+I ++ K++G +VL GVSLDVEKG++V IIG+SGSGKSTLLRC+N LE ++ G I Sbjct: 2 ALVEIKNVRKNYGPLEVLKGVSLDVEKGEIVTIIGRSGSGKSTLLRCINALETINSGEIL 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAH 122 + G + + LR++R++VGIVFQ++NLFPH+T+E+N+TLA + A+++A Sbjct: 62 LEGQPVS-ANMDGLRQMRQKVGIVFQAFNLFPHMTIEKNVTLAPVLTGRTDKRGARELAL 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 VL+ VGL +K +AYPEQLSGGQ QRVAIAR LAM+P LMLFDEVTSALDPEL EVLKV Sbjct: 121 SVLERVGLADKLKAYPEQLSGGQQQRVAIARCLAMSPHLMLFDEVTSALDPELVGEVLKV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 ME++A GMTMVLVTHEM+FAR +A LVFMHQG+VWE G P LF++P+T EL+ F+ Sbjct: 181 MEEMAAQGMTMVLVTHEMSFARNVATKLVFMHQGRVWEQGDPKRLFADPQTPELKSFI 238 >SMa0508 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Sme Sinorhizobium meliloti Length = 243 Score = 286 bits (732), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 146/244 (59%), Positives = 178/244 (72%), Gaps = 2/244 (0%) Query: 1 MSAIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGN 60 MS +V N + KSFG +VL GVSL VE G++VA+IG SGSGKST LRCLNGLE VD G Sbjct: 1 MSVVVAKN-IRKSFGGLQVLKGVSLTVEGGEVVALIGGSGSGKSTFLRCLNGLESVDSGE 59 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKI 120 I V GH + LR LR+ VGIVFQSYNLFPHLT NI LA +K + + A+ Sbjct: 60 IEVAGHRMSR-KPAELRRLRRDVGIVFQSYNLFPHLTAGENIMLAPVQVKGIGKDAARSE 118 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 A + L LVGL ++ EAYP+ LSGGQ QRVAIARSLAM P+++LFDEVTSALDPELT EVL Sbjct: 119 AKRCLSLVGLGDRFEAYPDMLSGGQQQRVAIARSLAMQPKVLLFDEVTSALDPELTGEVL 178 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 V+E LAR GMTM+LVTHEM FAR++A+ +FM G + E GP E FS+PKT EL+ F+ Sbjct: 179 AVIEKLARDGMTMILVTHEMGFARRVANRTIFMRDGIIHEEGPSAEFFSSPKTPELRAFL 238 Query: 241 SSDL 244 +++ Sbjct: 239 HAEV 242 >AGc2571 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 244 Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 186/238 (78%), Gaps = 1/238 (0%) Query: 3 AIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIH 62 ++++I ++ KS+GSN+VL G++LDVE G+++AIIGKSGSGKSTLLRC+NGLE + G+I Sbjct: 2 SLIEITEVRKSYGSNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLETISAGSIS 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAH 122 V G + D L+L+ LR +VG++FQ +NLFPH TV N+ L+ T +KK EA+ +A Sbjct: 62 VAGAQLLD-DDLHLKALRLKVGMIFQQFNLFPHQTVGGNVMLSQTVVKKTPKPEAEAVAR 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 +L+ VGL +K +AYP++LSGGQ QRVAIAR+LAM P +L DE+TSALDPEL +EVL V Sbjct: 121 TMLERVGLAHKFDAYPDELSGGQQQRVAIARALAMQPIALLCDEITSALDPELVSEVLAV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 + +LA GMT+++VTHEM FAR + +VFMH+G+V EIGPP+E+FSNP T EL++F+ Sbjct: 181 VRELAGEGMTLLMVTHEMKFARDVCSRVVFMHEGRVHEIGPPEEVFSNPATPELKQFL 238