BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0136.p         (121 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0478 [O] COG5265 ABC-type transport system involved in Fe-S c...   166   1e-41
AGc1966 [O] COG5265 ABC-type transport system involved in Fe-S c...   152   2e-37
RP205 [O] COG5265 ABC-type transport system involved in Fe-S clu...   151   3e-37
SMc00550 [O] COG5265 ABC-type transport system involved in Fe-S ...   149   2e-36
YPO2588 [O] COG5265 ABC-type transport system involved in Fe-S c...   147   6e-36

>RSc0478 [O] COG5265 ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components Rso Ralstonia
           solanacearum
          Length = 592

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 93/108 (86%), Gaps = 1/108 (0%)

Query: 2   VGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTL 61
           VGERGLKLSGGEKQRVAIARTLLK P IL+FDEATSALDSR E AIQ++L  +A+  TTL
Sbjct: 475 VGERGLKLSGGEKQRVAIARTLLKRPPILVFDEATSALDSRTEHAIQEELMRLAQNHTTL 534

Query: 62  VIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQA 109
           VIAHRLSTIV A QILVM+HGRI+ERGTHA LL A+G YAQMW R QA
Sbjct: 535 VIAHRLSTIVGAHQILVMEHGRIIERGTHASLLRAEGRYAQMW-RMQA 581


>AGc1966 [O] COG5265 ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 629

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 88/108 (81%)

Query: 1   MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 60
           MVGERGLKLSGGEKQRVAIART+LK P ILI DEATSALD+  EQ IQ  L+ +++ RTT
Sbjct: 494 MVGERGLKLSGGEKQRVAIARTILKAPPILILDEATSALDTHTEQEIQSALDIVSKNRTT 553

Query: 61  LVIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQ 108
           LVIAHRLST+++A +I+V+  G I ERGTHA L+  DGLYA MW RQ+
Sbjct: 554 LVIAHRLSTVIHADEIIVLKEGLIAERGTHASLMAHDGLYASMWSRQR 601


>RP205 [O] COG5265 ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components Rpr Rickettsia
           prowazekii
          Length = 609

 Score =  151 bits (382), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 89/107 (83%)

Query: 2   VGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTL 61
           VGERGLKLSGGEKQR+AIART+LK+P+I +FDEATS+LD++ E+ IQ  L+EI+   TTL
Sbjct: 486 VGERGLKLSGGEKQRIAIARTILKNPSIYVFDEATSSLDTKTEKLIQASLKEISANHTTL 545

Query: 62  VIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQ 108
           +IAHRLSTIV+A +I+V+D+G IVERG H  LL   G YA++W +QQ
Sbjct: 546 IIAHRLSTIVDADEIIVLDNGYIVERGNHKTLLKNQGYYAELWYKQQ 592


>SMc00550 [O] COG5265 ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components Sme
           Sinorhizobium meliloti
          Length = 627

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 87/108 (80%)

Query: 1   MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 60
           MVGERGLKLSGGEKQRVAIART+LK P ILI DEATSALD++ EQ IQ  L+ ++R RTT
Sbjct: 492 MVGERGLKLSGGEKQRVAIARTILKAPPILILDEATSALDTKTEQEIQAALDIVSRNRTT 551

Query: 61  LVIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQ 108
           LVIAHRLST++NA +I+V+  G I ERGTH  L+   GLYA MW RQ+
Sbjct: 552 LVIAHRLSTVINADEIIVLKDGVIAERGTHGELIDRGGLYASMWSRQR 599


>YPO2588 [O] COG5265 ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components Ype Yersinia
           pestis
          Length = 631

 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 87/106 (82%)

Query: 2   VGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTL 61
           VGERGLKLSGGEKQRVAIART+LK P+IL+FDEATSALD+  E+ IQ  L E++R+ TTL
Sbjct: 511 VGERGLKLSGGEKQRVAIARTILKKPSILVFDEATSALDTHTEREIQSHLREVSRDHTTL 570

Query: 62  VIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQ 107
           VIAHRLSTI++A +I+V++ G IVERG H  LL+ +G YA MW  Q
Sbjct: 571 VIAHRLSTIIDADEIIVLEAGSIVERGRHDELLLKNGRYAGMWQNQ 616