BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0132.p (315 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1342 [ET] COG0834 ABC-type amino acid transport/signal transdu... 304 2e-82 RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transd... 276 5e-74 PA5082 [ET] COG0834 ABC-type amino acid transport/signal transdu... 262 6e-70 RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transd... 259 5e-69 STM0665 [ET] COG0834 ABC-type amino acid transport/signal transd... 243 3e-64 >PA1342 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 302 Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 151/283 (53%), Positives = 200/283 (70%), Gaps = 1/283 (0%) Query: 13 ASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQ-GYSIDLCLKAAT 71 A++L + V A+E TG LKKIK++GT+TLG RD+SIPFSYL + GYS DL LK Sbjct: 14 AALLSAPVVADELTGTLKKIKETGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVVE 73 Query: 72 AIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQVAFSVTEFVTAN 131 A++K+L L L ++ VTS TRIPL+ NGT DI C S TNN+ER QV FSV F Sbjct: 74 AVKKELNLPELKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSVGIFEVGT 133 Query: 132 KFLSKKSANLKTLDDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDHAEAFLMVE 191 + LSKK+AN+K DDLKGK VV+T+GT++ + + A+NA++ +GMNI++AKDH E+F+M+E Sbjct: 134 RLLSKKTANIKDFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLE 193 Query: 192 TGRAAAFVMDDILLSSLAANSKAPADYQVSSEALSVEPYGLILPKGDNDFKKVVDEALTV 251 +GRA AF+MDD LL A +K P D+ V S E YG ++ KGD FKKVVD+A+T Sbjct: 194 SGRAVAFMMDDALLYGEMAKAKKPDDWVVGGTPQSFEIYGCMVRKGDAAFKKVVDKAITD 253 Query: 252 VYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294 Y ++ KIY KWF PIPPKG+NLN PMS +L+ ++A PTD Sbjct: 254 TYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELKKLIASPTD 296 >RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 313 Score = 276 bits (706), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 137/294 (46%), Positives = 190/294 (64%) Query: 1 MKLLKLAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQG 60 M L KLA VL VL S+ HA+E TG LKKIKD+GT+TLGVRDSSIPFSY G Sbjct: 16 MNLAKLATVLAAIGVLSSAAHAQELTGTLKKIKDTGTITLGVRDSSIPFSYNVGGVRTIG 75 Query: 61 YSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQV 120 YS D+ K A++++L L L +K +PVTS RI L+ NGT D+ C S TNN ER Q Sbjct: 76 YSYDVATKVVEAVKEQLKLKDLQVKEIPVTSQNRITLLQNGTIDLECGSTTNNLERQKQA 135 Query: 121 AFSVTEFVTANKFLSKKSANLKTLDDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAA 180 +F+ T F+ + + KK + +K DLKGK VV+T+GT++ + + +N E+ LGMNI++ Sbjct: 136 SFTNTIFIIGTRMMVKKDSGIKDWVDLKGKNVVTTAGTTSERLLRKMNDEKQLGMNIIST 195 Query: 181 KDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPADYQVSSEALSVEPYGLILPKGDND 240 KDH ++FL +E+GRA AF+MDD LL A +K PAD+ V + S E YG ++ K D Sbjct: 196 KDHGQSFLTLESGRAVAFMMDDALLYGERAKAKTPADWVVVGKPQSREAYGCMVRKDDAP 255 Query: 241 FKKVVDEALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294 FK + D+ + + K I Y KWF+ P+PPKG+NL+ P+S ++A++ P D Sbjct: 256 FKTLADKTIAGMMKDGSINAEYKKWFEQPVPPKGLNLDFPLSDDMKALIKSPND 309 >PA5082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 299 Score = 262 bits (670), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 3/299 (1%) Query: 1 MKLLKLAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSY-Q 59 MK L + + S+ + + AEE +G LKK+ D+GT+TLG RD+S+PFSYL D Sbjct: 1 MKTLVSSTFALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPM 60 Query: 60 GYSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQ 119 GYS++L K ++ LG L +K VTS TRIPL+ NGT D+ C S ER Q Sbjct: 61 GYSVELAGKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQNGTVDLECGSTGVTAERQKQ 120 Query: 120 VAFSVTEFVTANKFLSKKSANLKTLDDLKGKTVVSTSGTSNLKQITALNAERNLGMNILA 179 VAFS + L++K + + DDLKGK VV+T+GT+N + + NAE LGMN+++ Sbjct: 121 VAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVS 180 Query: 180 AKDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPADYQVSSEALSVEPYGLILPKGDN 239 AKDH EAF M+++GRA AF MDD LL A ++ P D+ V E S E Y ++ K D Sbjct: 181 AKDHGEAFQMLQSGRAVAFYMDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDP 240 Query: 240 DFKKVVDEALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTDSYDP 298 F +V+E L +Y+ +I+ IY +WFQ PIPPKG+NL PM+ +L+A+L PT DP Sbjct: 241 QFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTS--DP 297 >RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 301 Score = 259 bits (663), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 186/292 (63%), Gaps = 3/292 (1%) Query: 4 LKLAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQGYSI 63 L LAG + ASVL AE G LKKI+DS T+ +GVR+SSIPFSY D K G+S Sbjct: 10 LALAGA-IAASVL--PAQAEALDGTLKKIQDSNTILIGVRESSIPFSYRDSKNQIIGFSA 66 Query: 64 DLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQVAFS 123 DLC + A+++K+G L ++ +PVTS R L+ NG+ D+ C T+ + R Q AFS Sbjct: 67 DLCSRVIDAVKQKVGKPDLQVQQIPVTSQNRTALVQNGSVDLECGVTTHLKSREQQTAFS 126 Query: 124 VTEFVTANKFLSKKSANLKTLDDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDH 183 T F+ A + L+ + +K DL GK+V++ +GT++ + + +N E+ + MN+++ KD+ Sbjct: 127 TTFFIAATRLLTSTHSGVKDFPDLAGKSVITNAGTTSERILRKMNDEKKMNMNVISGKDY 186 Query: 184 AEAFLMVETGRAAAFVMDDILLSSLAANSKAPADYQVSSEALSVEPYGLILPKGDNDFKK 243 E+FL +++GR AF+MDD+LL+ ++ PAD+ V+ S E YG +L K D FKK Sbjct: 187 GESFLTLQSGRVQAFMMDDVLLAGARTLAQKPADWVVTGTPQSFEAYGFMLRKDDPQFKK 246 Query: 244 VVDEALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTDS 295 +VD+ LT V K +I +YAKWF+ P+PPKGVN PMS QL+A+ P D+ Sbjct: 247 LVDDTLTGVMKRGEISTLYAKWFEKPVPPKGVNFGFPMSEQLKALYTSPNDT 298 >STM0665 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 308 Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/298 (40%), Positives = 182/298 (61%), Gaps = 4/298 (1%) Query: 1 MKLLKLAGVLVGASVLMSSVHAEEFT----GRLKKIKDSGTLTLGVRDSSIPFSYLDDKQ 56 M+L KL ++ + HAE+ L KI +G + +G R+SS+PFSY D++Q Sbjct: 7 MQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ 66 Query: 57 SYQGYSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQER 116 GYS D A++KKL L +K++P+TS RIPL+ NGT D C S TNN ER Sbjct: 67 KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNLER 126 Query: 117 WNQVAFSVTEFVTANKFLSKKSANLKTLDDLKGKTVVSTSGTSNLKQITALNAERNLGMN 176 Q AFS T FV + L+KK ++K DLKGK VV TSGT++ + LN E+ +GM Sbjct: 127 QKQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMR 186 Query: 177 ILAAKDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPADYQVSSEALSVEPYGLILPK 236 I++AKDH ++F +E+GRA AF+MDD LL+ A +K P ++++ + S E YG +L K Sbjct: 187 IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK 246 Query: 237 GDNDFKKVVDEALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294 D +FKK++D+ + + +K + KWF++PIPPK +N+N +S +++A+ P D Sbjct: 247 NDPEFKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKAPND 304