BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0130.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0482 [E] COG0765 ABC-type amino acid transport system, permea...   100   1e-21
PA1341 [E] COG0765 ABC-type amino acid transport system, permeas...    97   1e-20
YPO2614 [E] COG0765 ABC-type amino acid transport system, permea...    92   2e-19
STM0664 [E] COG0765 ABC-type amino acid transport system, permea...    82   3e-16
gltJ [E] COG0765 ABC-type amino acid transport system, permease ...    81   5e-16

>RSc0482 [E] COG0765 ABC-type amino acid transport system, permease
           component Rso Ralstonia solanacearum
          Length = 242

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 72/102 (70%)

Query: 2   AGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMRE 61
           AG A+G T  QTYR+V+LPMAFRII+P LT+EF  I KNS+VA TIGL+EL A    + +
Sbjct: 140 AGLAMGFTLAQTYRHVMLPMAFRIIVPPLTSEFLNIFKNSAVASTIGLLELAAQGRQLVD 199

Query: 62  FTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYITG 103
           +T Q +E+    T++Y++I++  + + R +E  T +PG+I G
Sbjct: 200 YTAQPYESFIAVTLMYMLINLTVMGIMRWVEARTRLPGFIGG 241


>PA1341 [E] COG0765 ABC-type amino acid transport system, permease
           component Pae Pseudomonas aeruginosa
          Length = 248

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 68/103 (66%)

Query: 2   AGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMRE 61
           A  A+G    Q YR+VLLP AFRIIIP LT+EF  I KNSSVA  IGL+EL A T    E
Sbjct: 144 AARAMGFRLPQIYRHVLLPQAFRIIIPPLTSEFLNIFKNSSVASLIGLMELLAQTKQTAE 203

Query: 62  FTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYITGG 104
           F+   FEA + AT+IY  +++  + + RL+E+  AVPG I+ G
Sbjct: 204 FSANLFEAFTLATLIYFTLNMSLMLIMRLVERKVAVPGLISVG 246


>YPO2614 [E] COG0765 ABC-type amino acid transport system, permease
           component Ype Yersinia pestis
          Length = 246

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 69/98 (70%)

Query: 2   AGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMRE 61
           AG A+GLT  QTYRYVLLP A+R+IIP +T+E   ++KNS++A TIGLVE+ A    + +
Sbjct: 144 AGLAMGLTLTQTYRYVLLPNAYRVIIPPMTSEMLNLVKNSAIASTIGLVEMAAQAGKLLD 203

Query: 62  FTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPG 99
           ++   +E+ +  T+ Y++I+ + + + RL+EK   +PG
Sbjct: 204 YSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLPG 241


>STM0664 [E] COG0765 ABC-type amino acid transport system, permease
           component Sty Salmonella typhimurium LT2
          Length = 246

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 67/100 (67%)

Query: 2   AGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMRE 61
           A  A+GLT  Q YRYVLLP A+R+I+P +T+E   ++KNS++A TIGLV++ A    + +
Sbjct: 144 AALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLD 203

Query: 62  FTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYI 101
           ++   +E+ +  T+ Y++I+ + + +  L+E+   +PG +
Sbjct: 204 YSAHAWESFTAITLAYVLINAVIMLVMSLVERKVRLPGNV 243


>gltJ [E] COG0765 ABC-type amino acid transport system, permease
           component Eco Escherichia coli K12
          Length = 246

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 67/102 (65%)

Query: 2   AGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMRE 61
           A  A+GLT  Q YRYVLLP A+R+I+P +T+E   ++KNS++A TIGLV++ A    + +
Sbjct: 144 AALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLD 203

Query: 62  FTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYITG 103
           ++   +E+ +  T+ Y++I+   + +  L+E+   +PG + G
Sbjct: 204 YSAHAWESFTAITLAYVLINAFIMLVMTLVERKVRLPGNMGG 245