BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0125.p         (152 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0489 [O] COG1765 Predicted redox protein, regulator of disulf...   234   4e-62
PA0653 [O] COG1765 Predicted redox protein, regulator of disulfi...   164   8e-41
mll0741 [O] COG1765 Predicted redox protein, regulator of disulf...   155   2e-38
SMb20271 [O] COG1765 Predicted redox protein, regulator of disul...   145   3e-35
yhfA [O] COG1765 Predicted redox protein, regulator of disulfide...   142   2e-34

>RSc0489 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Rso Ralstonia solanacearum
          Length = 148

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 121/139 (87%)

Query: 1   MECTVRWTGLSGMTFTAETGSGHLLTMDGAPDGGGRNLAPRPMEVVLAGTGGCTAYDVVV 60
           MECTV WTG  GM F AETGSGHL+TMDGAPDGGGRNLAPRPME+VL GTGGCTAYDVV+
Sbjct: 1   MECTVSWTGPDGMAFLAETGSGHLVTMDGAPDGGGRNLAPRPMEMVLLGTGGCTAYDVVL 60

Query: 61  ILRKSGQDVRGCDVTLKSERAETDPKVFTRIHFHFTVRGRNLKTNVVERAIKLSHDKYCS 120
           IL++  QDV+GC V L +ERAETDPKVFTRIHF FTV GRNLK   VERA++LSH+KYCS
Sbjct: 61  ILKRGRQDVQGCSVKLLAERAETDPKVFTRIHFTFTVTGRNLKRETVERAVQLSHEKYCS 120

Query: 121 ASIMLEKTAEITHSFEIID 139
           ASIML KTAEITHS E++D
Sbjct: 121 ASIMLAKTAEITHSLELVD 139


>PA0653 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Pae Pseudomonas aeruginosa
          Length = 140

 Score =  164 bits (414), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 103/140 (73%), Gaps = 3/140 (2%)

Query: 1   MECTVRWTGLSGMTFTAETGSGHLLTMDGAPDGGGRNLAPRPMEVVLAGTGGCTAYDVVV 60
           M+  ++W G +   F  E+GSGH++ MDG PD GGRNL  RPME+VL G GGCT +DVV 
Sbjct: 1   MKARIQWAGEA--MFLGESGSGHVVVMDGPPDHGGRNLGVRPMEMVLIGLGGCTNFDVVS 58

Query: 61  ILRKSGQDVRGCDVTLKSERAETDPKVFTRIHFHFTVRGRNLKTNVVERAIKLSHDKYCS 120
           IL+K+ Q V  C+  L++ERA+ +PKVFT+IH HF V+GR LK   V+RA++LS +KYCS
Sbjct: 59  ILKKARQPVESCEAFLEAERADEEPKVFTKIHVHFVVKGRGLKEAQVKRAVELSAEKYCS 118

Query: 121 ASIMLEKTA-EITHSFEIID 139
           ASIML +   EITH +EI++
Sbjct: 119 ASIMLGRGGVEITHDYEIVE 138


>mll0741 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Mlo Mesorhizobium loti
          Length = 141

 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 96/139 (69%), Gaps = 2/139 (1%)

Query: 1   MECTVRWTGLSGMTFTAETGSGHLLTMDGAPDGGGRNLAPRPMEVVLAGTGGCTAYDVVV 60
           M+  ++W  +   TF  E+GSGH L +  A    G+   P PME+VL GTGGC+AYDVV 
Sbjct: 1   MKARIKW--VEERTFIGESGSGHKLVLGTASGPDGKTPGPSPMELVLIGTGGCSAYDVVH 58

Query: 61  ILRKSGQDVRGCDVTLKSERAETDPKVFTRIHFHFTVRGRNLKTNVVERAIKLSHDKYCS 120
           IL K  + V  C V L ++RAETDPKVFTRIH HF V+GR L ++ V+RAI LS +KYCS
Sbjct: 59  ILEKGREAVEDCVVELDADRAETDPKVFTRIHMHFIVKGRALSSDKVQRAINLSIEKYCS 118

Query: 121 ASIMLEKTAEITHSFEIID 139
           AS M+ KTA ITH FE+ID
Sbjct: 119 ASAMMAKTATITHDFEVID 137


>SMb20271 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Sme Sinorhizobium meliloti
          Length = 143

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 3/146 (2%)

Query: 1   MECTVRWTGLSGMTFTAETGSGHLLTMDGAPDGGGRNLAPRPMEVVLAGTGGCTAYDVVV 60
           M+  ++W  + G TF  E+GSGH +    A         P PME+VL GTGGC+A+DVV 
Sbjct: 1   MKARIKW--VEGRTFVGESGSGHKIVFGTATGPDSPTPGPSPMEMVLIGTGGCSAFDVVH 58

Query: 61  ILRKSGQDVRGCDVTLKSERAETDPKVFTRIHFHFTVRGRNLKTNVVERAIKLSHDKYCS 120
           IL K  + V  C V + ++RA+ DP+VFTRIH HF V+GR L    VERA+ LS +KYCS
Sbjct: 59  ILEKGREAVEDCVVEMDADRADQDPRVFTRIHMHFIVKGRGLAAKKVERAVALSIEKYCS 118

Query: 121 ASIMLEKTAEITHSFEIIDDLTDTSS 146
           AS ML KTA ITH FE++ D +DT++
Sbjct: 119 ASAMLAKTATITHDFEVV-DTSDTAA 143


>yhfA [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Eco Escherichia coli K12
          Length = 134

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 93/138 (67%), Gaps = 6/138 (4%)

Query: 1   MECTVRWTGLSGMTFTAETGSGHLLTMDGAPDGGGRNLAPRPMEVVLAGTGGCTAYDVVV 60
           M+  V+W  + G+TF  E+ SGH + MDG  + G +  AP PME+VL   GGC+A DVV 
Sbjct: 1   MQARVKW--VEGLTFLGESASGHQILMDG--NSGDK--APSPMEMVLMAAGGCSAIDVVS 54

Query: 61  ILRKSGQDVRGCDVTLKSERAETDPKVFTRIHFHFTVRGRNLKTNVVERAIKLSHDKYCS 120
           IL+K  QDV  C+V L SER E  P++FT I+ HF V GR+LK   V RA+ LS +KYCS
Sbjct: 55  ILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCS 114

Query: 121 ASIMLEKTAEITHSFEII 138
            ++MLEK   ITHS+E++
Sbjct: 115 VALMLEKAVNITHSYEVV 132