BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0123.p         (130 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0491 [J] COG0103 Ribosomal protein S9 Rso Ralstonia solanacearum   214   3e-56
NMB2056 [J] COG0103 Ribosomal protein S9 Nme Neisseria meningiti...   202   2e-52
NMA0379 [J] COG0103 Ribosomal protein S9 NmA Neisseria meningiti...   202   2e-52
rpsI [J] COG0103 Ribosomal protein S9 Eco Escherichia coli K12        176   1e-44
ZrpsI [J] COG0103 Ribosomal protein S9 EcZ Escherichia coli O157...   176   1e-44

>RSc0491 [J] COG0103 Ribosomal protein S9 Rso Ralstonia solanacearum
          Length = 130

 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 115/130 (88%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           MIGN+NYGTGRRKSAVARVFIK+G G+IIVNGKP A+YF+RET LM++RQPLELT +   
Sbjct: 1   MIGNWNYGTGRRKSAVARVFIKSGKGDIIVNGKPVADYFARETSLMMVRQPLELTNHGAT 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDIKVNV GGGE+GQAGAVRHGITRALIDYDA LK  LS AG VTRDAREVERKKVGL K
Sbjct: 61  FDIKVNVVGGGETGQAGAVRHGITRALIDYDATLKPTLSKAGLVTRDAREVERKKVGLHK 120

Query: 121 ARRAKQFSKR 130
           ARR KQFSKR
Sbjct: 121 ARRRKQFSKR 130


>NMB2056 [J] COG0103 Ribosomal protein S9 Nme Neisseria meningitidis MC58
          Length = 130

 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 111/130 (85%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           M G Y YGTGRRKS+VARVF+  G+G IIVNG+P  E+F+RET  MV+RQPL LT N E 
Sbjct: 1   MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETSRMVVRQPLVLTENAES 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDIKVNV GGGE+GQ+GA+RHGITRALID+DA LK ALS AGFVTRDAREVERKK GLRK
Sbjct: 61  FDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAGFVTRDAREVERKKPGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130


>NMA0379 [J] COG0103 Ribosomal protein S9 NmA Neisseria meningitidis Z2491
          Length = 130

 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 111/130 (85%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           M G Y YGTGRRKS+VARVF+  G+G IIVNG+P  E+F+RET  MV+RQPL LT N E 
Sbjct: 1   MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETSRMVVRQPLVLTENAES 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDIKVNV GGGE+GQ+GA+RHGITRALID+DA LK ALS AGFVTRDAREVERKK GLRK
Sbjct: 61  FDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAGFVTRDAREVERKKPGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130


>rpsI [J] COG0103 Ribosomal protein S9 Eco Escherichia coli K12
          Length = 130

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 101/130 (77%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           M  N  YGTGRRKS+ ARVFIK G+G I++N +   +YF RET  MV+RQPLEL   VE+
Sbjct: 1   MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEK 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
            D+ + V GGG SGQAGA+RHGITRAL++YD  L+S L  AGFVTRDAR+VERKKVGLRK
Sbjct: 61  LDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARR  QFSKR
Sbjct: 121 ARRRPQFSKR 130


>ZrpsI [J] COG0103 Ribosomal protein S9 EcZ Escherichia coli O157:H7
           EDL933
          Length = 130

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 101/130 (77%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           M  N  YGTGRRKS+ ARVFIK G+G I++N +   +YF RET  MV+RQPLEL   VE+
Sbjct: 1   MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEK 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
            D+ + V GGG SGQAGA+RHGITRAL++YD  L+S L  AGFVTRDAR+VERKKVGLRK
Sbjct: 61  LDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARR  QFSKR
Sbjct: 121 ARRRPQFSKR 130