BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0115.p         (194 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso ...    84   2e-16

>RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 181

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 4/175 (2%)

Query: 20  LPEREGLEQFQTSLLARMAASDNESMRSRRLAVAMGEHCYLVPLAQAGEIVPLSGLAITP 79
           L  R+ L ++Q  L  R+  +  ++     L V +G+  +L+ L   GE++     A   
Sbjct: 8   LTSRQRLHEYQAMLARRLQEARAKASMDSFLGVQIGDRHWLLSLGDTGEVLDYQPPA--R 65

Query: 80  VPATRDWFRGLLNIRGSLIGLADLMGLAGAVPQEIGRSSHVLLLAHGLAPQCGLLVSRVL 139
           VP T+ W+ GL+N RG+L+G+ D    +G  P   G  + +++L+      C +LV RV 
Sbjct: 66  VPLTQPWYLGLVNARGTLLGVIDFALFSGEAPTVGGVGAKMVVLSKDPQRACAILVPRVA 125

Query: 140 GLRDITEMTQISKNYDAEIPLLGLAGRYKDSGGQQWDELDLSLLSQDSRFLQIGR 194
           GLR ++++  +    +  +P    A  ++D+ G  W EL +  L  D  FLQ+GR
Sbjct: 126 GLRSLSDLQAVEAGQEDGLPWQNRA--WRDAQGTLWRELSVRQLLADPAFLQVGR 178