BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0113.p (681 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0671 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 546 e-155 PA0411 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 331 4e-90 XF1953 [NT] COG0840 Methyl-accepting chemotaxis protein Xfa Xyle... 251 5e-66 all0927 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nos... 193 1e-48 all2162 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nos... 169 1e-41 >RSc0671 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 743 Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust. Identities = 317/651 (48%), Positives = 433/651 (66%), Gaps = 8/651 (1%) Query: 28 TLQTNLASDLVMHSQRIGKAVPNAIQGNPQAFVQLAQSRLEFNRGLLLLSSGGPYQGQNI 87 +LQ +A D +MHSQR+ KAVP A+ GN AF QL +SR L L +G +G + Sbjct: 100 SLQIEIAGDTLMHSQRLAKAVPVALLGNESAFTQLKESRARLQSNLEALKTGSADRGLSA 159 Query: 88 GLPDPALKPALDNVARMWRRTDLAAETILGMEKELTGFGTTLKRLNQLLPVMLDLSEQIA 147 A + LD W+R++ +A+ +L EK L G TL N P +L+ +EQI+ Sbjct: 160 TAGGEA-QALLDKSIEEWKRSEKSAQAVLAQEKTLVSVGKTLNVFNASNPELLEEAEQIS 218 Query: 148 MLQSQGRPTTREMAAASQLVMLTLRLGRSSNEFLTSDGVNAETAFMLGKDITAFGDLLKS 207 ++ Q RE+AA+SQLVMLT RLG++ NEFL +GVN ETAF+LGKD F + L Sbjct: 219 SMKLQTNAPAREVAASSQLVMLTQRLGKNMNEFLAGEGVNPETAFLLGKDTNTFRETLNG 278 Query: 208 LLEGNEMLRLRAATDADLRSKLQELTRVFGEYQPQIAGILGNLQNFIAAKRSEQLVFMEN 267 LL G+E LRL AATD + + LQEL+ F Q IL NL IAAKR++Q +F +N Sbjct: 279 LLNGSEALRLSAATDPETKGYLQELSTRFDNVQKTTQIILENLPGLIAAKRAQQQIFNDN 338 Query: 268 ETLKRHLTELQEAYRVALKARSWTFWAVLCAMAMALLSAIGIALVQLQSSRNNAAAAEAR 327 E L+ L++LQ AY ++++R T AV+ + + + G+A + L+ SR A AEAR Sbjct: 339 EKLRADLSDLQSAYSGSVRSRPLTLGAVVLSAILTVACLAGLAALYLRDSRVRAMEAEAR 398 Query: 328 RQEAELQRQLAQQEEEKAMRANHLTQAAVLRLMTELQRVADGDLTVHTTVSDDVTGAIAD 387 ++EAE +R + + R N TQAA+LRLM ELQ +ADGDLT TVS+D+TGAIAD Sbjct: 399 QREAEERRMVEK-------RNNDATQAAILRLMNELQDIADGDLTKQATVSEDITGAIAD 451 Query: 388 SVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGTTTELGAAARAQARRIQRIAQAMLEMSN 447 SVNYTVE LR LV +V Q A +V +S V+ T+ +L A+ Q+R+I++ Q+++EM++ Sbjct: 452 SVNYTVEELRELVGRVQQTAEQVTQASSAVQTTSDKLVLASEEQSRQIRQTGQSVVEMAD 511 Query: 448 QITGISVSADESADVARHAVVVAERGARAVEDAVKAMDGIGEQIRETSERIKRLGASSQM 507 +IT +S A ESA+VAR ++ AE+G AV++A+ M+ I +QI++TS+RIKRLG SSQ Sbjct: 512 RITQVSRGAAESANVARASLAAAEQGQVAVQNAITGMNDIRDQIQDTSKRIKRLGESSQE 571 Query: 508 IGEITDLISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGAL 567 IGEI +LISDITE+TNVLALNAAIQAASAGEAGRGFSVVAEEVQ LAERS+ A ++IGAL Sbjct: 572 IGEIVELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSAEAAKQIGAL 631 Query: 568 VRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAGSALADIRSVSKRLADLIQGMAVSTREQ 627 +R IQ DT+D V AME+ST GV +GA LSD AG+AL +I VS++LA+LI+ ++ +T + Sbjct: 632 IRTIQTDTQDAVHAMERSTAGVVEGAKLSDNAGTALVEIGRVSRQLAELIESISQTTSHE 691 Query: 628 AVSANGVAQQIQGILSENDIIEQSREQVATLYEELWDAARQLESSVSRFRV 678 A A+ VAQ I+ IL + Q A +L A +L SV+RFR+ Sbjct: 692 ATLASDVAQNIEQILQMTEQTSTGSRQTAQSVRQLTQLAEELRDSVARFRI 742 >PA0411 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 682 Score = 331 bits (848), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 234/651 (35%), Positives = 364/651 (55%), Gaps = 35/651 (5%) Query: 34 ASDLVMHSQRIGKAVPNAIQGNPQAFVQLAQSRLEFNRGLLLLSSGGPYQGQNIGLPDP- 92 A +L + SQRI K A G +AF L +R +F + +L +G ++ LP Sbjct: 54 AGELRVLSQRIAKNATEAAAGKGEAFKLLKDARNDFEKRWNILVNGD----ESTSLPPSP 109 Query: 93 -ALKPALDNVARMWRRTDLAAETILGMEKELTGFGTTLKRLNQLLP-VMLDLSEQIAMLQ 150 A+KP +D V + W A++IL E+ + L + +P + ++ E + +L Sbjct: 110 EAVKPQMDVVQQDWDGLRKNADSILASEQTVLSLHQVASTLAETIPQLQVEYEEVVDILL 169 Query: 151 SQGRPTTREMAAASQLVMLTLRLGRSSNEFLTSDGVNAETAFMLGKDITAFGDLLKSLLE 210 G P ++A A + +L R+ S N+ L D + + A G+D + FG +LK + E Sbjct: 170 ENGAPAD-QVAVAQRQSLLAERILGSVNKVLAGDENSVQAADSFGRDASLFGRVLKGMQE 228 Query: 211 GNEMLRLRAATDADLRSKLQELTRVFGEYQPQIAGILGNLQNFIAAKRSEQLVFMENETL 270 GN + + T+A+ +L E+ +F + IL + + + +F ++TL Sbjct: 229 GNAAMSISKVTNAEAVDRLNEIAELFEFVSGSVDEILETSPDLFQVREAANNIFSVSQTL 288 Query: 271 KRHLTELQEAYRVALKARSWTFWAVLCAMAMALLSAIGIALVQLQSSRNNAAAAEARRQE 330 ++L + + RS +A A+AL S I I LV ++ Sbjct: 289 LDKASQLADGFENLAGGRSINLFAGYALGALALASIILIGLVMVR--------------- 333 Query: 331 AELQRQLAQQEEEKAMRANHLTQAAVLRLMTELQRVADGDLTVHTTVSDDVTGAIADSVN 390 E R+LA+ E+ N QAA+LRL+ E+ +ADGDLTV TV++D TGAIADS+N Sbjct: 334 -ETNRRLAETAEK-----NDRNQAAILRLLDEIADLADGDLTVAATVTEDFTGAIADSIN 387 Query: 391 YTVEALRGLVEQVTQMAAKVAWSSEHVRGTTTELGAAARAQARRIQRIAQAMLEMSNQIT 450 Y+++ LR LVE + Q A +VA +++ + T L A+ QA+ I + A+ EM+ I Sbjct: 388 YSIDQLRELVETINQTAVQVAAAAQETQSTAMHLAEASEHQAQEIAGASAAINEMAVSID 447 Query: 451 GISVSADESADVARHAVVVAERGARAVEDAVKAMDGIGEQIRETSERIKRLGASSQMIGE 510 +S +A ES+ VA +V +A +G V + + MD I EQI++TS+RIKRLG SSQ IG+ Sbjct: 448 QVSANASESSAVAERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIGD 507 Query: 511 ITDLISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRM 570 I LI+DI ++TN+LALNAAIQA+ AG+AGRGF+VVA+EVQ LAERSSAAT++I ALV+ Sbjct: 508 IVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIEALVKT 567 Query: 571 IQADTRDVVVAMEKSTNGVTDGAVLSDAAGSALADIRSVSKRLADLIQGMAVSTREQAVS 630 IQ DT + V++ME++T+ V GA L+ AG AL +I VSK LA LIQ ++ + R+QA S Sbjct: 568 IQTDTNEAVISMEQTTSEVVRGARLAQDAGVALEEIEKVSKTLAALIQNISNAARQQASS 627 Query: 631 ANGVAQQIQGILSENDIIEQSREQVATLYEELWDAAR---QLESSVSRFRV 678 A ++ + I +I Q+ + + A+ ++ +SVS F++ Sbjct: 628 AGHISNTMNVI---QEITSQTSAGTTATARSIGNLAKMASEMRNSVSGFKL 675 >XF1953 [NT] COG0840 Methyl-accepting chemotaxis protein Xfa Xylella fastidiosa 9a5c Length = 693 Score = 251 bits (640), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 203/631 (32%), Positives = 329/631 (52%), Gaps = 41/631 (6%) Query: 3 LGVLALSL----AALCLFMWLGARLYLLATLQTNLASDLVMHSQRIGKAVPNAIQGNPQA 58 +G+ LS+ A + + W G RL A ++A+ V+ Q + + A+ G+ +A Sbjct: 35 IGLFLLSMIVFSANIGVATWQGRRL---AGASADVANLQVLSQQLVSQG-REAVAGDSKA 90 Query: 59 FVQLAQSRLEFNRGLLLLSSGGPYQGQNIGLPDPALKPALDNVARMWRRTDLAAETILGM 118 F + + + + L + Y ++ ++ AL + W A+ ++ Sbjct: 91 FSNFKEIKSKIEDTVKKLEA--RYNNES------SVSDALFQLKNTWGPLSKNAKQLIDS 142 Query: 119 EKELTGFGTTLKRLNQLLP-VMLDLSEQIAMLQSQGRPTTREMAAASQLVMLTLRLGRSS 177 E + R +P + L+E + + + G P ++ Q+V+ + R Sbjct: 143 ESATLVLASNADRFVSNVPQLQAQLNEVVRAMTASGAPPSQFYNTLQQVVVAGT-MARRV 201 Query: 178 NEFLTSDGVNAETAFMLGKDITAFGDLLKSLLEGNEMLRLRAATDADLRSKLQELTRVFG 237 E TS A L +D F +L+ L GN+ L + + S L + ++ Sbjct: 202 AEMRTSGVGAAAAGDALARDSVMFTRMLEGLRNGNQELGISPVRNDATLSALTKSQSLWT 261 Query: 238 EYQPQIAGILGNLQNFIAAKRSEQLVFMENETLKRHLTELQEAYRV-----ALKARSW-T 291 + + IL AA+ S + + L +L A+ R + Sbjct: 262 TMKKDVDTILATSHQLFAAQSSVDALVNGSGKLLEDSNKLFNAFSTFGVGSVRDTRIFPN 321 Query: 292 FWAVLCAMAMALLSAIGIALVQLQSSRNNAAAAEARRQEAELQRQLAQQEEEKAMRANHL 351 FW + ++L+S +G+A + +R QE QR AQ E N Sbjct: 322 FWLTVIFGLLSLVSIVGLAW--------STVIYRSREQE---QRYQAQVE------FNSR 364 Query: 352 TQAAVLRLMTELQRVADGDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVA 411 Q A++RL+ E+ + +GDLTV +V++++TGAIAD++N V+ LR LV + +AKVA Sbjct: 365 NQQAIMRLLEEIISIGEGDLTVKASVTEEMTGAIADAINCAVDELRQLVATINTTSAKVA 424 Query: 412 WSSEHVRGTTTELGAAARAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAE 471 S+ + T L AA QA +I +++ + E++ I +S ++ ESA+VA+ +VV+A Sbjct: 425 VSAHETQTTAMRLAEAAGHQANQITTVSERISEIAASIEQVSRNSAESAEVAQRSVVIAA 484 Query: 472 RGARAVEDAVKAMDGIGEQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAI 531 GA V + ++ MD I +QI+ETS+RIKRLG SSQ IG I +LI+DI+E+TN+LALNAA+ Sbjct: 485 EGAGVVRETIQGMDQIRDQIQETSKRIKRLGESSQEIGSIVELINDISEQTNILALNAAV 544 Query: 532 QAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTD 591 QAASAGEAGRGF++VA+EVQ LAER+S+ATR I +LVR IQ DT + V +ME++T V Sbjct: 545 QAASAGEAGRGFAIVADEVQRLAERTSSATRRIESLVRAIQVDTNEAVSSMEQTTAEVVS 604 Query: 592 GAVLSDAAGSALADIRSVSKRLADLIQGMAV 622 GA L++ AG+AL +I VS L LI+ +++ Sbjct: 605 GARLAEDAGTALIEIEHVSNTLNHLIKNISI 635 >all0927 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nostoc sp. PCC 7120 Length = 980 Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 204/348 (58%), Gaps = 5/348 (1%) Query: 332 ELQRQLAQQEEEKAMRANHLTQAAVLRLMTELQRVADGDLTVHTTVSDDVTGAIADSVNY 391 E QR+ +QEE A Q V+RL+ +++ A GDLTV V+ DV GA+AD+ N Sbjct: 633 EAQRKADEQEE-----AKENLQRQVIRLLDDVEGAARGDLTVQAEVTADVLGAVADAFNL 687 Query: 392 TVEALRGLVEQVTQMAAKVAWSSEHVRGTTTELGAAARAQARRIQRIAQAMLEMSNQITG 451 T++ LR +V+QV A +V + + L + A QA + ++ M++ I Sbjct: 688 TIQNLRDIVQQVKVAAKEVTKGATNSETFARALSSDALRQAEELGVTLNSVQVMTDSIQR 747 Query: 452 ISVSADESADVARHAVVVAERGARAVEDAVKAMDGIGEQIRETSERIKRLGASSQMIGEI 511 ++ +A E+ VAR A +A +G AVE+ V + I E + ET+ ++KRL SSQ I +I Sbjct: 748 VAEAAREAEKVARDASTIALKGGEAVENTVAGILEIRETVAETTRKVKRLAESSQEISKI 807 Query: 512 TDLISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMI 571 LIS I RTN+LALNA+I+AA AGEAGRGF++VA+EV+ LA++S+ + +EI +V I Sbjct: 808 VALISQIASRTNLLALNASIEAARAGEAGRGFAIVADEVRQLADKSAKSLKEIEQIVMQI 867 Query: 572 QADTRDVVVAMEKSTNGVTDGAVLSDAAGSALADIRSVSKRLADLIQGMAVSTREQAVSA 631 Q++T V+ AME+ T V G L++ A +L +I V+ R+ L++ + T EQ ++ Sbjct: 868 QSETGSVMTAMEEGTQQVIKGTKLAEEAKRSLENIIQVANRIDILVRSITSDTVEQTETS 927 Query: 632 NGVAQQIQGILSENDIIEQSREQVATLYEELWDAARQLESSVSRFRVK 679 VAQ +Q + Q ++V+ + L +R L SSV RFRV+ Sbjct: 928 RAVAQVMQSVELTAQETSQEAQRVSGALQNLVGVSRDLISSVERFRVE 975 >all2162 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nostoc sp. PCC 7120 Length = 752 Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 180/318 (56%) Query: 361 TELQRVADGDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGT 420 + ++ VA GDLTV V+ G +AD N VE LR +V QV Q A ++ + G Sbjct: 434 SNVEGVAKGDLTVRADVTAGEIGTVADFFNSIVENLRDIVTQVKQAAGQLNTAIGSNEGA 493 Query: 421 TTELGAAARAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAERGARAVEDA 480 +L A QA I R A+ +M++ + ++ SA ++A VA HA A + +A++ Sbjct: 494 IRQLAEEALTQATEINRTLDAVDKMTHSMQAVADSAQQAATVANHAAFTATKSGQAMDLT 553 Query: 481 VKAMDGIGEQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAIQAASAGEAG 540 V+ + + + ET++++KRLG SSQ I + +I+ I +TN+LA+NA I+AA AGE G Sbjct: 554 VQNILSLRTTVGETAKKVKRLGESSQQISRVVSIINQIATQTNLLAINAGIEAARAGEEG 613 Query: 541 RGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAG 600 GF VVAEE+ LA RS+ AT+EI +V IQ +T +VV AME T V +G + + A Sbjct: 614 EGFGVVAEEIGELAARSAVATQEIEQIVENIQRETNEVVKAMEVGTTQVVEGTRIVEEAK 673 Query: 601 SALADIRSVSKRLADLIQGMAVSTREQAVSANGVAQQIQGILSENDIIEQSREQVATLYE 660 +L I VS+++ LIQ ++ +T Q ++ V + +Q I S + S VA + Sbjct: 674 QSLGQILDVSRQIDSLIQSISTATVSQVETSQTVNRLMQDIASVSQRSSDSSRLVAQSLK 733 Query: 661 ELWDAARQLESSVSRFRV 678 + + + QL+ +V F+V Sbjct: 734 QTVEISHQLQKTVGTFKV 751