BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0111.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0672_2 [NT] COG0643 Chemotaxis protein histidine kinase and r...    90   1e-18
CC0433 [NT] COG0643 Chemotaxis protein histidine kinase and rela...    86   1e-17
AGc912 [NT] COG0643 Chemotaxis protein histidine kinase and rela...    82   2e-16
SMc03007 [NT] COG0643 Chemotaxis protein histidine kinase and re...    79   3e-15
sll0043_3 [NT] COG0643 Chemotaxis protein histidine kinase and r...    78   5e-15

>RSc0672_2 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases
            Rso Ralstonia solanacearum
          Length = 1200

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 52/69 (75%)

Query: 5    EQWSETRLAELIFEPGFSTQSQVSALAGRGIGMDVVRAEVAALGGRMTVHSRPGQGVLFT 64
            E+ SE RL E+IF PGFST  QVS LAGRG+GMDVVRAE  ALGGR+++ + P  G  FT
Sbjct: 968  EEASEARLTEMIFSPGFSTAQQVSELAGRGVGMDVVRAETVALGGRISLQTTPNVGTRFT 1027

Query: 65   LYLPLSLAT 73
            ++LPL+ A 
Sbjct: 1028 IHLPLTTAI 1036


>CC0433 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Ccr Caulobacter vibrioides
          Length = 762

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 5/129 (3%)

Query: 6   QWSETRLAELIFEPGFSTQSQVSALAGRGIGMDVVRAEVAALGGRMTVHSRPGQGVLFTL 65
           Q ++  +  LIF PGFST  ++S ++GRG+GMDVV+  V ALGGR+++ SRPGQG  FTL
Sbjct: 543 QLTDEEIDNLIFLPGFSTAEKISDVSGRGVGMDVVKRSVQALGGRISISSRPGQGSTFTL 602

Query: 66  YLPLSLATVXGKKKKKGG-----PGAAQAGGPWPGTAAASAARPAGRAAASAAAGHERSR 120
            LPL+LA + G      G     P AA      P         P G   A   +      
Sbjct: 603 SLPLTLAVLDGMVVDVAGETLVVPLAAIVESLRPKPEEVRPLGPVGSVLAVRDSFVPLID 662

Query: 121 FGLCLAHQE 129
            GL L ++E
Sbjct: 663 VGLTLGYRE 671


>AGc912 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 757

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 51/71 (71%)

Query: 6   QWSETRLAELIFEPGFSTQSQVSALAGRGIGMDVVRAEVAALGGRMTVHSRPGQGVLFTL 65
             ++  +  LIF PGFST  ++S ++GRG+GMDVV+  + ALGGR+++ SRPG G  FT+
Sbjct: 541 NLTDEEIDNLIFAPGFSTADKISDISGRGVGMDVVKRSIQALGGRISISSRPGLGSTFTM 600

Query: 66  YLPLSLATVXG 76
            LPL+LA + G
Sbjct: 601 SLPLTLAVLDG 611


>SMc03007 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Sme Sinorhizobium meliloti
          Length = 758

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 51/69 (73%)

Query: 8   SETRLAELIFEPGFSTQSQVSALAGRGIGMDVVRAEVAALGGRMTVHSRPGQGVLFTLYL 67
           S+  +  LIF  GFST  ++S ++GRG+GMDVV+  + ALGGR+ + S+PGQG +FT+ L
Sbjct: 544 SDEEVDNLIFHAGFSTADKISDISGRGVGMDVVKRSIQALGGRINISSKPGQGSIFTMSL 603

Query: 68  PLSLATVXG 76
           PL+LA + G
Sbjct: 604 PLTLAVLDG 612


>sll0043_3 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Syn Synechocystis
          Length = 920

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query: 5   EQWSETRLAELIFEPGFSTQSQVSALAGRGIGMDVVRAEVAALGGRMTVHSRPGQGVLFT 64
           ++ +  ++  LIFEP FST  QVS L+GRG+G+DVVR ++ AL G + V SRPG+G +F+
Sbjct: 690 QRLTTEQIDNLIFEPNFSTADQVSELSGRGVGLDVVRQQLQALKGTIVVSSRPGRGTVFS 749

Query: 65  LYLPLSLA 72
           L LPL+L 
Sbjct: 750 LRLPLTLT 757