BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0107.p (316 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3776 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 194 2e-49 SMb20683 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 117 4e-26 PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 114 2e-25 ynfL [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 113 6e-25 ZynfL [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 113 7e-25 >PA3776 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 154/235 (65%), Gaps = 1/235 (0%) Query: 1 MISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQ 60 MIS+RQL YFVEIVE+ G++RA+ERLF+AQSALSRQ++ELE + L++R + ELT Sbjct: 1 MISLRQLHYFVEIVESGGFSRAAERLFVAQSALSRQVRELEDSIGTPLLRRGPRQVELTP 60 Query: 61 AGQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFP 120 AG+ F R++R+L DL+ A AR +G+G HG LRL HSSSVPL L L L Sbjct: 61 AGRAFLPRAQRLLGDLEAARRLAREVGEGGHGLLRLGHSSSVPLVGGLQAALRGYLAVQS 120 Query: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLA 180 G+ LE++Q SE Q ++ EG D+GL RLP+LR HP L LYRE L+ A+ A H LA Sbjct: 121 GVRLELTQQSSEQQLADLAEGRLDLGLLRLPVLRQHPRLHLRALYREPLLLALAADHPLA 180 Query: 181 AR-SEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARXPGKSARHL 234 R + V +A L E FV++PH RGGLSY AE C+ GFYPR AR + L Sbjct: 181 RREAPVALAALAGETFVSIPHLQRGGLSYRAAELCLGAGFYPRPARALSRKTSQL 235 >SMb20683 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 299 Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 ISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQA 61 + +R LRYFV + +A +T A+ L I+Q LS+QI++LEA++ L +R ++ ELT+A Sbjct: 1 MELRHLRYFVAVADAASFTAAARGLNISQPPLSQQIRDLEAEVGTRLFERSSRNVELTEA 60 Query: 62 GQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFPG 121 G +F E +R IL ++ AV QAR IG G+ G L + + SV L PL + +PG Sbjct: 61 GANFLEHARMILGQVEHAVQQARAIGSGQVGTLNIATTGSV-LLGPLSNLIARFRGAWPG 119 Query: 122 ISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLAA 181 + + I + E Q ++ D+ R P R +P+L + V + E++ A+P HR+A Sbjct: 120 VFVRIHEMDPEAQEAALLSHRTDLSFVRRP--RNNPDLVAHVAWHEKVGVALPEHHRMAG 177 Query: 182 RSEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVAR 225 +E+ +LR E FV + D YL + C+A GF P + Sbjct: 178 SETIELGDLRKENFVFLRLADSRFARYL-HDCCVAAGFVPDITN 220 >PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 2 ISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQA 61 + +R LRYF+ + E + RA+ERL I+Q LS+QI+ LE ++ L +R + ELT A Sbjct: 1 MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDA 60 Query: 62 GQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFPG 121 G+ F + SR++L +D+AV AR GE G L++ +SS P ++ + +++A K +P Sbjct: 61 GRLFLDESRQVLAQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPD 120 Query: 122 ISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTV-LYRERLVAAVPATHRLA 180 + L++ + S + ++E S +G+ R P+ A P+ V L+RE LVA + A H LA Sbjct: 121 VHLDLQEMSSRQVLKALLEESLQVGVIR-PL--ALPDAVHWVELFREPLVAVLRADHPLA 177 Query: 181 ARSE--VEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVAR 225 A SE + IA L +E FV P GL V GF PR+A+ Sbjct: 178 AGSEDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQAGFSPRIAQ 224 >ynfL [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 297 Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 112/204 (54%), Gaps = 3/204 (1%) Query: 2 ISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQA 61 I +R LRYFV + E + RA+ RL I+Q LS+QI+ LE + L+ R ++ LT A Sbjct: 3 IELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLTAA 62 Query: 62 GQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFPG 121 G+ F SR+IL +D A A+A + +GE G LR+ +SS P + TL+ +D+P Sbjct: 63 GKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDYPD 122 Query: 122 ISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLAA 181 + L+ + + Q ++EG+ D+GL R L +LE V+ E L+A +P H LA Sbjct: 123 VHLQTREMNTREQIAPLIEGTLDMGLLRNTALPE--SLEHAVIVHEPLMAMIPHDHPLAN 180 Query: 182 RSEVEIAELRDEFFVTV-PHRDRG 204 V +AEL E FV PH G Sbjct: 181 NPNVTLAELAKEPFVFFDPHVGTG 204 >ZynfL [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 297 Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 111/204 (54%), Gaps = 3/204 (1%) Query: 2 ISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQA 61 I +R LRYFV + E + RA+ RL I+Q LS+QI+ LE + L+ R ++ LT A Sbjct: 3 IELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLTAA 62 Query: 62 GQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFPG 121 G+ F SR+IL +D A A+A + +GE G LR+ +SS P + TL+ +D+P Sbjct: 63 GKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDYPD 122 Query: 122 ISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLAA 181 + L+ + + Q ++EG+ D+GL R L LE V+ E L+A +P H LA Sbjct: 123 VHLQTREMNTREQIAPLIEGTLDMGLLRNTALPE--TLEHAVIVHEPLMAMIPHDHPLAN 180 Query: 182 RSEVEIAELRDEFFVTV-PHRDRG 204 V +AEL E FV PH G Sbjct: 181 NPNVTLAELAKEPFVFFDPHVGTG 204