BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0093.p (495 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2666 [C] COG0277 FAD/FMN-containing dehydrogenases Rso Ralsto... 752 0.0 PA5355 [C] COG0277 FAD/FMN-containing dehydrogenases Pae Pseudom... 639 0.0 glcD [C] COG0277 FAD/FMN-containing dehydrogenases Eco Escherich... 638 0.0 mlr6916 [C] COG0277 FAD/FMN-containing dehydrogenases Mlo Mesorh... 543 e-154 BMEII1064 [C] COG0277 FAD/FMN-containing dehydrogenases Bme Bruc... 537 e-152 >RSc2666 [C] COG0277 FAD/FMN-containing dehydrogenases Rso Ralstonia solanacearum Length = 497 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/497 (73%), Positives = 418/497 (84%), Gaps = 2/497 (0%) Query: 1 MNAP--AQPSFAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLP 58 MNAP A A Q E++ AL ++PA +L++ EDT PYECDGLAAYRQ+P+ V LP Sbjct: 1 MNAPLPAAARDPSAVQAELIAALSPLMPADALLWEREDTTPYECDGLAAYRQVPLAVALP 60 Query: 59 ENEAQVIAIMKACHALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTA 118 ++EAQV+ I++ACH L V +VPRGAGT LSGGAMP G+V+S AKF +ILK+D ++RTA Sbjct: 61 DSEAQVVEILRACHRLGVPVVPRGAGTSLSGGAMPTPGGLVLSLAKFKRILKLDPHTRTA 120 Query: 119 VVQPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRV 178 VQPGVRNLAISEAAAPHGLYYAPDPSSQIAC+IGGNV+ENSGGVHCLKYGLTVHNVLRV Sbjct: 121 AVQPGVRNLAISEAAAPHGLYYAPDPSSQIACTIGGNVSENSGGVHCLKYGLTVHNVLRV 180 Query: 179 RMVTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFD 238 R V ++GEVVE GS A DAPGLDLLA IGSEGML VVTEVTV+LVPKPQ A+VIMASFD Sbjct: 181 RAVMMDGEVVEFGSEAPDAPGLDLLAAVIGSEGMLAVVTEVTVRLVPKPQLAQVIMASFD 240 Query: 239 DVVKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEV 298 DV GGNAVA VIAAGIIPAGLEMMDK ++ VE FV+AGYD+DA AILLCESDGT EEV Sbjct: 241 DVEAGGNAVAEVIAAGIIPAGLEMMDKPATAAVEEFVRAGYDLDAAAILLCESDGTPEEV 300 Query: 299 EEEIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKK 358 EEI RM++VL ASGAT I SQSEAERL+FWSGRKNAFPAAGRISPDYYCMDGTIPRK Sbjct: 301 AEEIARMSEVLRASGATRIQVSQSEAERLKFWSGRKNAFPAAGRISPDYYCMDGTIPRKH 360 Query: 359 LAQVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVE 418 + +L I +ME+ Y LRC NVFHAGDGN+HPLILF+ DE+HRAELFGA+ILE CVE Sbjct: 361 IGTLLKRIQQMEQNYALRCINVFHAGDGNMHPLILFNGEDQDEWHRAELFGADILETCVE 420 Query: 419 VGGTITGEHGVGIEKINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYG 478 +GGT+TGEHGVG+EK+NSMCVQFS ER+AF ++K AFDPA LLNPDKAIPTL RCAEYG Sbjct: 421 LGGTVTGEHGVGVEKLNSMCVQFSAEERDAFLRVKAAFDPARLLNPDKAIPTLARCAEYG 480 Query: 479 KMHVQRGQLRFPDLPRF 495 K+HV+ G L PDLPRF Sbjct: 481 KLHVRNGLLPHPDLPRF 497 >PA5355 [C] COG0277 FAD/FMN-containing dehydrogenases Pae Pseudomonas aeruginosa Length = 499 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/475 (65%), Positives = 374/475 (78%) Query: 21 LRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPENEAQVIAIMKACHALQVQIVP 80 LR +P +L ED RPYECDGL+AYR P++V LPE QV ++ CH L+V +V Sbjct: 25 LRLRLPDLELLHAAEDLRPYECDGLSAYRCTPLLVALPERIEQVQGLLALCHRLKVPVVA 84 Query: 81 RGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVVQPGVRNLAISEAAAPHGLYY 140 RGAGTGLSGGA+P+ +GV++ A+F +IL++D R A VQPGVRNLAIS+AAAPHGLYY Sbjct: 85 RGAGTGLSGGALPLENGVLLVMARFRRILEIDPLGRFARVQPGVRNLAISQAAAPHGLYY 144 Query: 141 APDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIEGEVVELGSGALDAPGL 200 APDPSSQIACSIGGNVAEN+GGVHCLKYGLTVHN+L+V +VT+EGE + LGS ALD+ G Sbjct: 145 APDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLQVDIVTLEGERLSLGSSALDSAGF 204 Query: 201 DLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVIAAGIIPAGL 260 DLLA+F GSEG+LGVV EVTV+L+P+P A+V++ASFDDV G AVA++I AGI+PAGL Sbjct: 205 DLLALFTGSEGLLGVVVEVTVRLLPRPPVAKVLLASFDDVESAGRAVADLIGAGIVPAGL 264 Query: 261 EMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEEIGRMTDVLNASGATAIACS 320 EMMD S R E F+ AGY +DA AILLCE DG +V E+ R+ ++ A+GAT++ + Sbjct: 265 EMMDNLSIRAAEDFIHAGYPVDAAAILLCELDGVEADVHEDCERVRELFEAAGATSVRQA 324 Query: 321 QSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQVLLGIAEMEKKYGLRCANV 380 Q EAER RFW+GRKNAFPA GRISPDYYCMDG+IPR++L +VL GIAE+ ++YGLR ANV Sbjct: 325 QDEAERQRFWAGRKNAFPAVGRISPDYYCMDGSIPRRELPRVLHGIAELSREYGLRVANV 384 Query: 381 FHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVGGTITGEHGVGIEKINSMCVQ 440 FHAGDGN+HPLILFDAN+A E RAE G ILELCV VGG+ITGEHGVG EKIN MC Q Sbjct: 385 FHAGDGNMHPLILFDANLAGELERAEALGGRILELCVAVGGSITGEHGVGREKINQMCAQ 444 Query: 441 FSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKMHVQRGQLRFPDLPRF 495 F+ E F +K AFDPA LLNP K +PTLHRCAE+G MHV G+L FP+L RF Sbjct: 445 FNADELTLFHAVKAAFDPAGLLNPGKNVPTLHRCAEFGAMHVHHGRLPFPELERF 499 >glcD [C] COG0277 FAD/FMN-containing dehydrogenases Eco Escherichia coli K12 Length = 499 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/482 (64%), Positives = 371/482 (76%) Query: 14 QREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPENEAQVIAIMKACHA 73 + V+ ALR VP +L +E+ PYECDGL+AYR P++VVLP+ QV AI+ CH Sbjct: 18 RTSVLMALREHVPGLEILHTDEEIIPYECDGLSAYRTRPLLVVLPKQMEQVTAILAVCHR 77 Query: 74 LQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVVQPGVRNLAISEAA 133 L+V +V RGAGTGLSGGA+P+ GV++ A+F +IL ++ R A VQPGVRNLAIS+A Sbjct: 78 LRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILDINPVGRRARVQPGVRNLAISQAV 137 Query: 134 APHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIEGEVVELGSG 193 APH LYYAPDPSSQIACSIGGNVAEN+GGVHCLKYGLTVHN+L++ + T++GE + LGS Sbjct: 138 APHNLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKIEVQTLDGEALTLGSD 197 Query: 194 ALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVIAA 253 ALD+PG DLLA+F GSEGMLGV TEVTVKL+PKP ARV++ASFD V K G AV ++IA Sbjct: 198 ALDSPGFDLLALFTGSEGMLGVTTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAN 257 Query: 254 GIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEEIGRMTDVLNASG 313 GIIP GLEMMD S R E F+ AGY +DAEAILLCE DG +V+E+ R+ D+L +G Sbjct: 258 GIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAG 317 Query: 314 ATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQVLLGIAEMEKKY 373 AT + +Q EAER+RFW+GRKNAFPA GRISPDYYCMDGTIPR+ L VL GIA + ++Y Sbjct: 318 ATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPRRALPGVLEGIARLSQQY 377 Query: 374 GLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVGGTITGEHGVGIEK 433 LR ANVFHAGDGN+HPLILFDAN EF RAE G +ILELCVEVGG+I+GEHG+G EK Sbjct: 378 DLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSISGEHGIGREK 437 Query: 434 INSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKMHVQRGQLRFPDLP 493 IN MC QF+ E F +K AFDP LLNP K IPTLHRCAE+G MHV G L FP+L Sbjct: 438 INQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRCAEFGAMHVHHGHLPFPELE 497 Query: 494 RF 495 RF Sbjct: 498 RF 499 >mlr6916 [C] COG0277 FAD/FMN-containing dehydrogenases Mlo Mesorhizobium loti Length = 475 Score = 543 bits (1399), Expect = e-154, Method: Compositional matrix adjust. Identities = 275/475 (57%), Positives = 344/475 (72%) Query: 21 LRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPENEAQVIAIMKACHALQVQIVP 80 +R +VP V+ R +E DGL AYRQLP+VVVLPE AQV ++K C+ +++VP Sbjct: 1 MRIIVPGEGVVDAANAMRAFESDGLTAYRQLPLVVVLPETVAQVSRVLKYCNDRNIRVVP 60 Query: 81 RGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVVQPGVRNLAISEAAAPHGLYY 140 RG+GT LSGGA+P+ D V++ ++FN+IL +D +R V QPGV NL I+ A G YY Sbjct: 61 RGSGTSLSGGALPLEDAVLLVMSRFNRILAIDFPNRIVVAQPGVTNLGITTAVEQEGFYY 120 Query: 141 APDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIEGEVVELGSGALDAPGL 200 APDPSSQIACSIGGNVAENSGGVHCLKYGLT +NVL + MV + GEVV LG LDA G Sbjct: 121 APDPSSQIACSIGGNVAENSGGVHCLKYGLTANNVLGIEMVLMNGEVVRLGGSHLDAEGY 180 Query: 201 DLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVIAAGIIPAGL 260 DLL V GSEG+LGVVTEVTV+++ KP+ AR ++ F +GG VA++I AGIIP G+ Sbjct: 181 DLLGVMTGSEGLLGVVTEVTVRILKKPETARALLIGFPTSEQGGQCVADIIGAGIIPGGM 240 Query: 261 EMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEEIGRMTDVLNASGATAIACS 320 EMMD+ + E FV AGY +D EA+L+ E DG EV+ I + + ++G+T S Sbjct: 241 EMMDRPAIHAAEDFVHAGYPLDVEALLIVELDGPGVEVDHLITAVEAIAISNGSTTCRIS 300 Query: 321 QSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQVLLGIAEMEKKYGLRCANV 380 QSEAERL FW+GRK AFPA GRISPDYYCMDGTIPRK+L +VL G+ E+ +KYGL ANV Sbjct: 301 QSEAERLSFWAGRKAAFPAVGRISPDYYCMDGTIPRKELPRVLAGMRELSEKYGLGVANV 360 Query: 381 FHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVGGTITGEHGVGIEKINSMCVQ 440 FHAGDGNLHPLIL+DAN+ E +AE FGA+IL LCV+VGG +TGEHGVG+EK + M Sbjct: 361 FHAGDGNLHPLILYDANVPGELDKAESFGADILRLCVKVGGVLTGEHGVGVEKRDLMPEM 420 Query: 441 FSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKMHVQRGQLRFPDLPRF 495 F+ + + ++K AFDP LLNP K P L RCAE G+MHV RGQ+ FPD+PRF Sbjct: 421 FNQVDLDQQMRIKCAFDPNHLLNPGKVFPQLRRCAELGRMHVHRGQVAFPDIPRF 475 >BMEII1064 [C] COG0277 FAD/FMN-containing dehydrogenases Bme Brucella melitensis Length = 541 Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust. Identities = 273/483 (56%), Positives = 346/483 (71%) Query: 13 RQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPENEAQVIAIMKACH 72 R+ ++V LR +VP V+ R +E DGL A+RQLP+VVVLPE QV +++ CH Sbjct: 59 RREQIVADLRVIVPGEGVVDTVNAMRVFETDGLTAHRQLPLVVVLPETVEQVAQVLRYCH 118 Query: 73 ALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVVQPGVRNLAISEA 132 +++VPRGAGT LSGG+MP+ D V++ ++FN+IL++D +R AVVQPGV NL I++A Sbjct: 119 DNAIRVVPRGAGTSLSGGSMPLEDAVLLVMSRFNRILEIDYPNRVAVVQPGVTNLGITKA 178 Query: 133 AAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIEGEVVELGS 192 G YYAPDPSSQIACSIGGNVAEN+GGVHCLKYGLT +NVL + MV I GEV+ LG Sbjct: 179 VEHEGFYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTANNVLGIEMVLITGEVMRLGG 238 Query: 193 GALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVIA 252 LD+ DLL + GSEG+LGVVTE+TV+++ KP+ AR IM F + G VA++I Sbjct: 239 KHLDSEAYDLLGLMTGSEGLLGVVTEITVRILQKPETARAIMVGFPSSEQAGQCVADIIG 298 Query: 253 AGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEEIGRMTDVLNAS 312 AGIIP G+EMMD+ + + E FV+ GY +D EA+L+ E DG EV+ +GR+ + + Sbjct: 299 AGIIPGGMEMMDRPAIKAAEDFVRVGYPLDVEALLIVELDGPPVEVDYLLGRVEKIALQN 358 Query: 313 GATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQVLLGIAEMEKK 372 G+T SQSE +RL FW+GRK AFPA GRISPDY CMDGTIPRK+L +VL G+ + +K Sbjct: 359 GSTTCTLSQSEEQRLAFWAGRKAAFPAVGRISPDYLCMDGTIPRKELPRVLSGMRALSEK 418 Query: 373 YGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVGGTITGEHGVGIE 432 YGLR ANVFHAGDGNLHPLIL+DAN E AE FGA+IL LCV+VGG +TGEHGVGIE Sbjct: 419 YGLRVANVFHAGDGNLHPLILYDANNPGELEAAEDFGADILRLCVKVGGVLTGEHGVGIE 478 Query: 433 KINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKMHVQRGQLRFPDL 492 K + M F+ + + ++K AFD LLNP K P L RCAE G+MHV RG L FPDL Sbjct: 479 KRDLMPEMFNETDLDQQMRVKCAFDAKHLLNPGKVFPQLRRCAELGRMHVSRGALAFPDL 538 Query: 493 PRF 495 PRF Sbjct: 539 PRF 541