BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0077.p (298 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3121 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 180 4e-45 BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 179 5e-45 BMEII0820 [K] COG0583 Transcriptional regulator Bme Brucella mel... 175 1e-43 PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 172 7e-43 STM1487 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 168 2e-41 >STM3121 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 292 Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 159/287 (55%), Gaps = 5/287 (1%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 +ELRH+ YF VAE HF RAA L I QPPL++QI LERELGAQLF R +LT A Sbjct: 1 MELRHIRYFLAVAEERHFTRAATKLGIGQPPLSQQIKDLERELGAQLFRRVPHGAELTEA 60 Query: 62 GKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYN-ILPAVTRHYSAAYPE 120 GK FY + RA A + G+SG L+VGF S+A+N ++P R + AYP+ Sbjct: 61 GKAFYDVVKGMPATATRAVLAAQRVARGESGVLRVGFTASAAFNSVVPGAIRTFKRAYPD 120 Query: 121 VDMRLSEYVPNLLATDLEDEKIDVGIMYRP--EDCRRLDSHTIYAEPLLAVLPRGHRLAH 178 V ++L E LA +L + +DV + RP R + EP++ VL H A Sbjct: 121 VRLQLEEGNTTQLADELNEGSLDVAFL-RPGFTGNERFQLRLLSEEPMVIVLAETHPAAA 179 Query: 179 KPDISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGL 238 I+ + L ++ F+ PR I +YD + + C GF P+I +++NLV + Sbjct: 180 CKQIALSILKDEFFLLFPREIGLSLYDAVIKACGKAGFEPKIGQLVPQISSVINLVSAEM 239 Query: 239 GVALVPTSMQAMHLDTTVFKPLIGA-PTVEVAVIWNRENTNPCIRTF 284 GV++VP SM+ +++ V++P+ P ++A+ + R +T+P +R F Sbjct: 240 GVSMVPDSMRQVNVKGVVYRPVADQMPVAKLALAYRRGDTSPTLRNF 286 >BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 302 Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 156/288 (54%), Gaps = 9/288 (3%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 +ELRHL YF VAE LHFG+AA L+++QPPL++QI LE E+G L R+KR ++LT+A Sbjct: 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60 Query: 62 GKYFYRDT----TEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYSAA 117 G+ F +I + +E A+R A G+ G L +GF+ S+ Y LP + R Y Sbjct: 61 GEIFLNHCRMALMQIGQGIELAQRTA----RGEQGLLVIGFVGSATYEFLPPIVREYRKK 116 Query: 118 YPEVDMRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLA 177 +P V + L E + +L ID+GI++ P L T + P + LP+ H L Sbjct: 117 FPSVKIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPLT 176 Query: 178 HKPDISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEG 237 K I+ +L ++ I++ + P +Y Q C+ GFRP IV E Q ++ LV G Sbjct: 177 SKESITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAG 236 Query: 238 LGVALVPTSMQAM-HLDTTVFKPLIGAPTVEVAVIWNRENTNPCIRTF 284 +G+ VP+S + + +LD T K E + + ++N NP I+ F Sbjct: 237 IGMTFVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHF 284 >BMEII0820 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 299 Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 149/268 (55%), Gaps = 4/268 (1%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 +ELRHL YF VAE +F RAA L I QPPL++QI LE E+G LF R +LT+A Sbjct: 5 MELRHLRYFLAVAEEGNFTRAAAKLGIGQPPLSQQIRDLENEIGVMLFHRVPHGAELTAA 64 Query: 62 GKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYN-ILPAVTRHYSAAYPE 120 G F + T + E+AK A ++ G+SG L +GF SSA+N I+ RH+ A +PE Sbjct: 65 GAAFLEEATATIASSEKAKLAAQRAARGESGRLSLGFTASSAFNPIVSGAIRHFRAKWPE 124 Query: 121 VDMRLSEYVPNLLATDLEDEKIDVGIMYRP--EDCRRLDSHTIYAEPLLAVLPRGHRLAH 178 V++ L+E NLL L ++D + RP ED + + EP+L LP HRLA Sbjct: 125 VELFLTEMNTNLLIERLVRGELDTAFI-RPGLEDPANVRMKRLADEPMLVALPSHHRLAV 183 Query: 179 KPDISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGL 238 + + LA + F+ PR + +YD I C++ GF + E ++VNLV L Sbjct: 184 YERLPLSALAGEPFVLFPRIVGLSLYDDIAAACRMAGFEMNVTQEAPQMPSVVNLVAANL 243 Query: 239 GVALVPTSMQAMHLDTTVFKPLIGAPTV 266 GV++VP ++ + LD ++P+ G P V Sbjct: 244 GVSIVPAAIAQIRLDGVTYRPIEGEPLV 271 >PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 164/290 (56%), Gaps = 10/290 (3%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 +ELRHL YF VAE LHFGRAAE L ISQPPL++QI ALE E+GA+LF+R+ R ++LT A Sbjct: 1 MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDA 60 Query: 62 GKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAY-NILPAVTRHYSAAYPE 120 G+ F ++ ++ +++A A + G+ G LK+GF S+ + + +P+ + AYP+ Sbjct: 61 GRLFLDESRQVLAQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPD 120 Query: 121 VDMRLSEYVPNLLATDLEDEKIDVGI---MYRPEDCRRLDSHTIYAEPLLAVLPRGHRLA 177 V + L E + L +E + VG+ + P+ ++ ++ EPL+AVL H LA Sbjct: 121 VHLDLQEMSSRQVLKALLEESLQVGVIRPLALPDAVHWVE---LFREPLVAVLRADHPLA 177 Query: 178 HKPD--ISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVG 235 + ++ A LAE+ F+ PR +YD + + GF PRI E + TI+ LV Sbjct: 178 AGSEDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQAGFSPRIAQEASEAMTIIGLVS 237 Query: 236 EGLGVALVPTSMQAMHLDTTVFKPLIGAPTVEVAVIWNRENT-NPCIRTF 284 GLGV+++P S + +D V++ L + R+N +P +F Sbjct: 238 AGLGVSILPASFRRTRVDGVVYRTLSDPEATTAVWLVRRQNEGSPLALSF 287 >STM1487 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 299 Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 155/279 (55%), Gaps = 6/279 (2%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 IELRHL YF VAE LHFGRAA L+ISQPPL++QI LE+++GA+L R+ R++ LT+A Sbjct: 3 IELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQVGARLLARTNRSVALTAA 62 Query: 62 GKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYS---AAY 118 G+ F D+ I + A A G++G +++GF S+ + + AV+ +S +Y Sbjct: 63 GRQFLVDSRHILSLVNDAAARAERLHQGEAGEIRIGFTSSAPF--IRAVSHTFSLFRQSY 120 Query: 119 PEVDMRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLAH 178 P V M+ E L + +D+G++ L+ I EPL+A++PR HRLA Sbjct: 121 PGVHMQTREMNTREQIAPLNEGVLDIGLLRNTPLPDTLNREVILHEPLMAMIPREHRLAQ 180 Query: 179 KPDISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGL 238 KP +S ELAE+ F+ + +YD I + + P I E TI+ LV GL Sbjct: 181 KPVVSLTELAEEPFVFFDPHVGTGLYDDILGLMRRYNLSPTITQEVGEAMTIIGLVAAGL 240 Query: 239 GVALVPTSMQAMHLDTTVFKPLIGAPTV-EVAVIWNREN 276 GV+++P S + + + + PL V E+ ++W + + Sbjct: 241 GVSILPASFKRVQMSEMRWVPLAEEDAVSEMWLVWPKHH 279