BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0075.p (761 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 284 7e-76 CC0896 Non COG 258 5e-68 AGl1027 [T] COG5001 Predicted signal transduction protein contai... 250 1e-65 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 241 4e-63 SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti 223 1e-57 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 284 bits (726), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 185/446 (41%), Positives = 257/446 (57%), Gaps = 16/446 (3%) Query: 314 GLIQQLEQEKSRAYQLASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFK 373 L+ + + ++R QLA +D LTG+ NR F E L+ A +R L ++DLD FK Sbjct: 326 ALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLA-APEAR--LGLLYIDLDGFK 382 Query: 374 LINDTLGHAVGDALLQEVARRLRAAV-REYDLVARLGGDEFVVLVSEIRSEEVVAEIADK 432 L+NDT GH GDALL+ VA+RLRA R +ARLGGDEF VLV ++ A +A Sbjct: 383 LVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRA-ATLATA 441 Query: 433 LVETLRAPYPDLLGCD--VETAPSIGIALYPRDGQSITTLMTNADSAMYTAKSAGSGLYR 490 L+E L APY LG D V SIGIAL P G+ L+ AD A+Y AK+AG GL R Sbjct: 442 LIEALGAPYA--LGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLAR 499 Query: 491 FYDASLNA-IAVRGLELLGRFRQALK-ENEFCLHYQPKVALQDYRVVGMEALIRWQHPEH 548 + A + I R L L + R AL+ ++ + YQP V + +V EAL+RW H E Sbjct: 500 LFCADMETRIQARAL-LEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAER 558 Query: 549 GLIFPGEFIGLAETHDLVQPLGHWIIEAVCRQLAQWRADGLPLVPVAINVSAKQLNDERL 608 G + P EF+ +AE L+ LG +++ CR+ +W DG VA+NVS QL L Sbjct: 559 GWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWE-DG---ARVAVNVSPMQLGKATL 614 Query: 609 IATVRESLQRHQLSAHWLEIEVTESCFITDLEQARQTLEKLRDEGLRIYLDDYGTGYSSL 668 TV +L L+ LEIEVTE+ I + ++ + L +L D G+R+ LDD+GTGYSSL Sbjct: 615 AQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSL 674 Query: 669 SHIKALPVYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLK 728 +H++A P +KIDRSFVRD+ ++V + L R LG+ VAEGVET+ + ++ Sbjct: 675 AHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIR 734 Query: 729 LMGCDEVQGFYLQRPVAAAQLVPLLQ 754 GC E QG+Y RP + + P ++ Sbjct: 735 EAGCTEAQGYYYGRPAPSDEDRPRVE 760 >CC0896 Non COG Length = 677 Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 257/488 (52%), Gaps = 24/488 (4%) Query: 272 QYYLQAILISLLVVVLSGGLIAMAHRRRFLYEQLLYSE---REKSGLIQQLEQEKSRAYQ 328 Q QA+ +++VV +I + R F L+ S +K+ ++L E R Sbjct: 173 QPVFQAMAANIVVVSAVMIVILLTQYREF--SDLVQSRVTLTQKAEEARRLSDENDR--- 227 Query: 329 LASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALL 388 LA+ D LT +PNR ++ + AR+S + +DLD FK IND GHA GD LL Sbjct: 228 LANLDSLTDLPNRRRYFAELDARVEAARQSGRGFVAGVIDLDDFKPINDAFGHATGDRLL 287 Query: 389 QEVARRLRAAVREYDLVARLGGDEFVVLVSEIRSEEVVAEIADKLVETLRAPYPDLLGCD 448 EV RRL+A L ARLGGDEF +++ + + + +L +L+A Y DL G Sbjct: 288 IEVGRRLKAFDGAPILAARLGGDEFGLIIDAALEPDALRVLGRELCASLQATY-DLRGVR 346 Query: 449 VETAPSIGIALYPRDGQSITTLMTNADSAMYTAKSAGSGLYRFYDASLNAIAVRGLELLG 508 + SIG +P + L AD A+Y AK G G +D A A+R + ++ Sbjct: 347 AQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDERHEA-AIRDMAVVE 405 Query: 509 R-FRQALKENEFCLHYQPKVALQDYRVVGMEALIRWQHPEHGLIFPGEFIGLAETHDLVQ 567 + R A E E +H+QP V + R + +EAL RW PE G I P FIG AE + Sbjct: 406 QALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVFIGAAERSGQIV 465 Query: 568 PLGHWIIEAVCRQLAQWRADGLPLVPVAINVSAKQL----NDERLIATVRESLQRHQLSA 623 + ++ R++ W D V V+IN+SA+ + N RL+A V ES ++ Sbjct: 466 EITRLLVAKALREMRAWPMD----VRVSINLSARDIASMENVRRLLAIVSESC----IAP 517 Query: 624 HWLEIEVTESCFITDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKALPVYALKIDR 683 H ++ E+TE+ + D +QAR L + G+R LDD+GTG+SSLSH++ LP+ LKID Sbjct: 518 HRIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPLDKLKIDA 577 Query: 684 SFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRP 743 SFV DI ++ + IV + + L RNL ++ V EGVET Q + +G +QG++ RP Sbjct: 578 SFVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHFARP 637 Query: 744 VAAAQLVP 751 + A+ VP Sbjct: 638 M-PAEAVP 644 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 165/480 (34%), Positives = 252/480 (52%), Gaps = 23/480 (4%) Query: 269 AHRQYYLQAILISLLVVVLSGGLIAMAHRRRFLYEQLLYSEREKSGLIQQLEQEKSRAYQ 328 A RQ AI I++L+V I + + R F E+++ S+ Q+ E + Sbjct: 169 ASRQPTFIAIAINVLLVCAGMMSILLTNYRNF--ERMVISQ-------QRTEALSNENLL 219 Query: 329 LASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALL 388 LA+ D LTG+PNR F+ EL+ AR AL +DLD FK +ND GH+VGD LL Sbjct: 220 LANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRLL 279 Query: 389 QEVARRLRAAVREYDLVARLGGDEFVVLVSEIRSEEVVAEIADKLVETLRAPYPDLLGCD 448 V++RL A ++ RLGGDEF ++ I + + A+ + E LRAPY G Sbjct: 280 INVSKRLTANLKASKAF-RLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGT- 337 Query: 449 VETAPSIGIALYPRDGQSITTLMTNADSAMYTAKSAGSGLYRFYDASLNAIAVRGLELLG 508 V + S+GIA++P ++ L AD A+Y AK G +DA + + + Sbjct: 338 VHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHE----KQINIEA 393 Query: 509 RFRQALKE----NEFCLHYQPKVALQDYRVVGMEALIRWQHPEHGLIFPGEFIGLAETHD 564 R LK+ NE + +QP V ++D + G EAL RW P G + P +F +AE Sbjct: 394 RIEHLLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAG 453 Query: 565 LVQPLGHWIIEAVCRQLAQWRADGLPLVPVAINVSAKQLNDERLIATVRESLQRHQLSAH 624 +V L +++ + W P + ++ N+SA+ LN + ++ ++ Sbjct: 454 IVGSLTRPLLKMALASASTWD----PSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTR 509 Query: 625 WLEIEVTESCFITDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKALPVYALKIDRS 684 L++E+TE+ F D EQ RQ+++ LR G I LDD+GTGYSSL+ + ALP+ +KIDRS Sbjct: 510 RLDLEITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRS 569 Query: 685 FVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPV 744 FV D+ + IV S + L+R++ L+ V EGVET +L L+ +G VQG+ P+ Sbjct: 570 FVTDLHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 629 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 120/258 (46%), Positives = 167/258 (64%) Query: 489 YRFYDASLNAIAVRGLELLGRFRQALKENEFCLHYQPKVALQDYRVVGMEALIRWQHPEH 548 Y F++AS+N + L+L+ R AL+ +E LHYQPK + VVG+EAL+RWQHPE Sbjct: 1 YCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPER 60 Query: 549 GLIFPGEFIGLAETHDLVQPLGHWIIEAVCRQLAQWRADGLPLVPVAINVSAKQLNDERL 608 GL+ P FI LAE L+ PLG W+++ CRQ+AQWR +G +A+N+SA Q L Sbjct: 61 GLVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAAL 120 Query: 609 IATVRESLQRHQLSAHWLEIEVTESCFITDLEQARQTLEKLRDEGLRIYLDDYGTGYSSL 668 + TVR++L RH L L +E+TES + D + + L++L G+RI +DD+GTGYSSL Sbjct: 121 VDTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSL 180 Query: 669 SHIKALPVYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLK 728 ++K LP LKIDR FVRD+ +D+ D IV++ V L + L L++VAEGVET Q L Sbjct: 181 LYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLT 240 Query: 729 LMGCDEVQGFYLQRPVAA 746 +GC +QG L RP+ A Sbjct: 241 RLGCHALQGNLLGRPMTA 258 >SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 257 Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 153/235 (65%) Query: 510 FRQALKENEFCLHYQPKVALQDYRVVGMEALIRWQHPEHGLIFPGEFIGLAETHDLVQPL 569 R+AL EF LH+QP+++L+ R+ EAL+RWQHP G+I P FI LAE L+ P+ Sbjct: 9 LREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAFIPLAEETGLIVPI 68 Query: 570 GHWIIEAVCRQLAQWRADGLPLVPVAINVSAKQLNDERLIATVRESLQRHQLSAHWLEIE 629 G W++ CRQL W+ GLP + V++NVSA+Q + A V L+ L A +LE+E Sbjct: 69 GDWVLRTACRQLKAWQDAGLPPLIVSVNVSARQFRERNWAARVAAVLEETCLEARYLELE 128 Query: 630 VTESCFITDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKALPVYALKIDRSFVRDI 689 +TES + D+ A T+ L G+ + +DD+GTGYSSLS +K PV LKIDRSFV DI Sbjct: 129 LTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRRLKIDRSFVTDI 188 Query: 690 RNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPV 744 +D D I ++ ++LA+ LGL+V+AEGVET Q+ L+ GC E+QG++ +P+ Sbjct: 189 PHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGYFFSQPL 243