BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0059.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1266 [G] COG0395 ABC-type sugar transport system, permease co... 346 3e-95 SMb20418 [G] COG0395 ABC-type sugar transport system, permease c... 334 1e-91 AGl3246 [G] COG0395 ABC-type sugar transport system, permease co... 332 7e-91 ZugpE [G] COG0395 ABC-type sugar transport system, permease comp... 332 8e-91 ECs4297 [G] COG0395 ABC-type sugar transport system, permease co... 332 8e-91 >RSc1266 [G] COG0395 ABC-type sugar transport system, permease component Rso Ralstonia solanacearum Length = 282 Score = 346 bits (888), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 190/284 (66%), Positives = 232/284 (81%), Gaps = 3/284 (1%) Query: 1 MIERRPVLDFLSHVVLVLGVLIVFFPLYVAFVASTQTAEQSALSPLSLVPGGEFINNYSA 60 MIERRP LD L+H+VL+LGV++V FP+YV FVAS+ TAE +P++L+PG I+NY Sbjct: 1 MIERRPFLDVLTHLVLILGVVVVAFPVYVVFVASSLTAEDVLQAPMTLIPGPHLIDNYRE 60 Query: 61 VLFKGAAGQVTAPPVLNMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 VL G T PV ML SL AL I++GKI+IS++SAFAIVYFRFP R FFW+IF Sbjct: 61 VLAHGMGNAAT--PVGTMLMNSLIMALGISLGKIAISIISAFAIVYFRFPLRKTFFWLIF 118 Query: 121 VTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAAR 180 VTLMLPVEVRI PTY+VVSDLGMLNSY GL++P+IASATATFLFRQFFLT+PDELAEAAR Sbjct: 119 VTLMLPVEVRILPTYKVVSDLGMLNSYFGLTIPIIASATATFLFRQFFLTIPDELAEAAR 178 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLI 240 IDGAGPL+F DV+ PLSRT++ ALFVI FIYGWNQYLWPL++ T+ M PI +G+ +I Sbjct: 179 IDGAGPLKFFWDVVLPLSRTSIAALFVIQFIYGWNQYLWPLLVTTERDMTPIVLGVTQMI 238 Query: 241 S-GGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 S GDSA +WNL+MAT++LAM+PP LVV+ MQ+WFVKGLV++EK Sbjct: 239 SRSGDSATDWNLLMATVMLAMVPPVLVVIGMQRWFVKGLVETEK 282 >SMb20418 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 282 Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 160/283 (56%), Positives = 216/283 (76%), Gaps = 1/283 (0%) Query: 1 MIERRPVLDFLSHVVLVLGVLIVFFPLYVAFVASTQTAEQSALSPLSLVPGGEFINNYSA 60 MIE+RP+ + + H++L++G++IV FP+Y FVAS+ ++ + P+ LVPG NYS Sbjct: 1 MIEKRPISNLIGHLMLIIGIIIVVFPIYYTFVASSMSSVEIIRPPMPLVPGTRLAENYSE 60 Query: 61 VLFKGAAGQVTAPPVLNMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 L G +V + +L+ + A+ IA+GKI IS LSAFAIV+FRFP R FFWMIF Sbjct: 61 AL-SGGVERVVGVSLERLLFNTFVVAIAIAVGKIVISFLSAFAIVFFRFPLRMAFFWMIF 119 Query: 121 VTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PTY+V+ DLG++++YAGL++PL+ASATATFLFRQFFLT+P EL EAAR Sbjct: 120 ITLMLPVEVRILPTYKVIVDLGLIDTYAGLTLPLMASATATFLFRQFFLTIPGELVEAAR 179 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLI 240 ID AGP RF++D+L PLS+TN+ ALFVI+FIYGW QYLWPL++ D+ M I IG++ ++ Sbjct: 180 IDNAGPFRFMRDILLPLSKTNIAALFVILFIYGWTQYLWPLLVTNDSRMNTIIIGLRKMV 239 Query: 241 SGGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 D++ WN VM T ILA++PP VVV+MQ+WFVKGLV++EK Sbjct: 240 DFTDASTPWNYVMVTAILAIIPPVAVVVLMQRWFVKGLVETEK 282 >AGl3246 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 282 Score = 332 bits (850), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 165/283 (58%), Positives = 214/283 (75%), Gaps = 1/283 (0%) Query: 1 MIERRPVLDFLSHVVLVLGVLIVFFPLYVAFVASTQTAEQSALSPLSLVPGGEFINNYSA 60 MIE RP+ ++H++LVLG++IV FP+Y F+AS+ T+ P+SL+PG NY+ Sbjct: 1 MIENRPIARVIAHLMLVLGIIIVAFPIYYTFIASSMTSNDIIRPPMSLLPGDHLSANYTE 60 Query: 61 VLFKGAAGQVTAPPVLNMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 + G V + +L+ S AL IAIGKI IS LSAFAIV+FRFP R FFWMIF Sbjct: 61 AMVGGVERVVGVS-LERLLFNSFVVALAIAIGKIVISFLSAFAIVFFRFPFRMGFFWMIF 119 Query: 121 VTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PTY+V+ DLG++++YAGL++PL+ASATATFLFRQFFLT+P EL EAAR Sbjct: 120 ITLMLPVEVRILPTYKVIVDLGLIDTYAGLTLPLMASATATFLFRQFFLTIPGELVEAAR 179 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLI 240 ID AGP RF++D+L PLSRTN+ ALFVI+FIYGW QYLWPL++ D M I IG+K ++ Sbjct: 180 IDNAGPFRFMRDILLPLSRTNIAALFVILFIYGWTQYLWPLLVTNDAKMNTIIIGLKRMV 239 Query: 241 SGGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 D++ WN VM T ILA++PP +VVV+MQ+WFVKGLV++EK Sbjct: 240 DFTDASTPWNYVMVTAILAIIPPVMVVVLMQRWFVKGLVETEK 282 >ZugpE [G] COG0395 ABC-type sugar transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 281 Score = 332 bits (850), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 163/283 (57%), Positives = 211/283 (74%), Gaps = 2/283 (0%) Query: 1 MIERRPVLDFLSHVVLVLGVLIVFFPLYVAFVASTQTAEQSALSPLSLVPGGEFINNYSA 60 MIE RP L SH +L+LG+ ++ FPLYVAFVA+T + +P++L+PG + N Sbjct: 1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHN 60 Query: 61 VLFKGAAGQVTAPPVLNMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 + G + P ML S A I +GKI++SMLSAFAIV+FRFP R LFFWMIF Sbjct: 61 IWVNGVGTN--SAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIF 118 Query: 121 VTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PT +V+++L ML+SYAGL++PL+ASATATFLFRQFF+T+PDEL EAAR Sbjct: 119 ITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAAR 178 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLI 240 IDGA P+RF D+++PLS+TN+ ALFVI FIYGWNQYLWPL+I TD + GIK +I Sbjct: 179 IDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMI 238 Query: 241 SGGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 + G+ EWN VMA M+L ++PP ++V+VMQ+ FV+GLVDSEK Sbjct: 239 ATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281 >ECs4297 [G] COG0395 ABC-type sugar transport system, permease component Ecs Escherichia coli O157:H7 Length = 281 Score = 332 bits (850), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 163/283 (57%), Positives = 211/283 (74%), Gaps = 2/283 (0%) Query: 1 MIERRPVLDFLSHVVLVLGVLIVFFPLYVAFVASTQTAEQSALSPLSLVPGGEFINNYSA 60 MIE RP L SH +L+LG+ ++ FPLYVAFVA+T + +P++L+PG + N Sbjct: 1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHN 60 Query: 61 VLFKGAAGQVTAPPVLNMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 + G + P ML S A I +GKI++SMLSAFAIV+FRFP R LFFWMIF Sbjct: 61 IWVNGVGTN--SAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIF 118 Query: 121 VTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PT +V+++L ML+SYAGL++PL+ASATATFLFRQFF+T+PDEL EAAR Sbjct: 119 ITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAAR 178 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLI 240 IDGA P+RF D+++PLS+TN+ ALFVI FIYGWNQYLWPL+I TD + GIK +I Sbjct: 179 IDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMI 238 Query: 241 SGGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 + G+ EWN VMA M+L ++PP ++V+VMQ+ FV+GLVDSEK Sbjct: 239 ATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281